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L1_007_000M1_scaffold_1028

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1028_1
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..335)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1Q5P7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKY23050.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
hypothetical protein
L1_007_000M1_scaffold_1028_2
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(478..1761)
DNA (1284bp) protein (428aa)
dihydroorotase (EC:3.5.2.3)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00088289};; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
Dihydroorotase n=3 Tax=Lachnospiraceae RepID=L1Q4X2_9FIRM
L1_007_000M1_scaffold_1028_3
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1785..2231)
DNA (447bp) protein (149aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=B0P2I7_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA32771.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L1_007_000M1_scaffold_1028_4
unknown

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comp(2304..4442)
DNA (2139bp) protein (713aa)
Polyphosphate kinase (EC:2.7.4.1)
Polyphosphate kinase {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191}; EC=2.7.4.1 {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191};; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
Polyphosphate kinase n=2 Tax=Clostridiales RepID=D4MW53_9FIRM
L1_007_000M1_scaffold_1028_5
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4524..5912)
DNA (1389bp) protein (463aa)
glycyl-tRNA synthetase, dimeric type (EC:6.1.1.14)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
Glycine--tRNA ligase n=3 Tax=Clostridiales RepID=D4MW52_9FIRM
L1_007_000M1_scaffold_1028_6
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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6012..6344
DNA (333bp) protein (111aa)
Predicted transcriptional regulators n=5 Tax=Clostridiales RepID=D4MW51_9FIRM
Predicted transcriptional regulators
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CDA32768.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L1_007_000M1_scaffold_1028_7
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6421..7143)
DNA (723bp) protein (241aa)
DNA repair protein RecO n=5 Tax=Clostridiales RepID=D4MW50_9FIRM
DNA replication and repair protein RecO
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L1_007_000M1_scaffold_1028_8
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7146..8051)
DNA (906bp) protein (302aa)
GTPase Era n=3 Tax=Clostridiales RepID=D4MW49_9FIRM
GTP-binding protein Era
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
L1_007_000M1_scaffold_1028_9
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8075..10975)
DNA (2901bp) protein (967aa)
Predicted Zn-dependent peptidases insulinase-like n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5Z189_9FIRM
Predicted Zn-dependent peptidases insulinase-like {ECO:0000313|EMBL:CDA32765.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Predicted Zn-dependent peptidases, insulinase-like
L1_007_000M1_scaffold_1028_10
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11128..12174)
DNA (1047bp) protein (349aa)
Lyzozyme M1 (1,4-beta-N-acetylmuramidase) n=3 Tax=Clostridiales RepID=D4MW47_9FIRM
Glycosyl hydrolase family 25 {ECO:0000313|EMBL:CDA32764.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
L1_007_000M1_scaffold_1028_11
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12278..12874)
DNA (597bp) protein (199aa)
RNA polymerase sigma factor n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5YZC1_9FIRM
RNA polymerase, sigma 29 subunit, SigE
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L1_007_000M1_scaffold_1028_12
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13000..13764)
DNA (765bp) protein (255aa)
Sporulation factor SpoIIGA n=3 Tax=Clostridiales RepID=D4MW45_9FIRM
Sporulation factor SpoIIGA.
Sigma-E processing peptidase SpoIIGA {ECO:0000313|EMBL:CDA32762.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L1_007_000M1_scaffold_1028_13
unknown

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13963..14448
DNA (486bp) protein (162aa)
G:T/U mismatch-specific DNA glycosylase n=2 Tax=Clostridiales RepID=D4MW43_9FIRM
G:T/U mismatch-specific DNA glycosylase
G:T/U mismatch-specific DNA glycosylase {ECO:0000313|EMBL:CBL39609.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L1_007_000M1_scaffold_1028_14
unknown

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comp(14430..15104)
DNA (675bp) protein (225aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0P2H6_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL39608.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L1_007_000M1_scaffold_1028_15
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15101..16006)
DNA (906bp) protein (302aa)
Endonuclease IV (EC:3.1.21.2 3.1.21.-)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
Probable endonuclease 4 n=4 Tax=Clostridiales RepID=D4MW41_9FIRM
L1_007_000M1_scaffold_1028_16
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16411..16773)
DNA (363bp) protein (121aa)
Helix-turn-helix n=4 Tax=Clostridiales RepID=D4MW40_9FIRM
Helix-turn-helix.
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EKY23035.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L1_007_000M1_scaffold_1028_17
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16932..17084
DNA (153bp) protein (51aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=B0P2H2_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA32757.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L1_007_000M1_scaffold_1028_18
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17231..17518
DNA (288bp) protein (96aa)
Sulfate permease n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1Q4Y0_9FIRM
Sulfate permease {ECO:0000313|EMBL:EKY23033.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
Sulfate permease and related transporters (MFS superfamily)
L1_007_000M1_scaffold_1028_19
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17515..18870
DNA (1356bp) protein (452aa)
Sulfate permease n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1Q4Y0_9FIRM
Sulfate permease {ECO:0000313|EMBL:EKY23033.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
Sulfate permease and related transporters (MFS superfamily)
L1_007_000M1_scaffold_1028_20
unknown

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comp(18873..20156)
DNA (1284bp) protein (428aa)
Cytosine deaminase and related metal-dependent hydrolases n=3 Tax=Clostridiales RepID=D4MW38_9FIRM
Cytosine deaminase and related metal-dependent hydrolases
Cytosine deaminase and related metal-dependent hydrolases {ECO:0000313|EMBL:CBL39604.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L1_007_000M1_scaffold_1028_21
unknown

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comp(20168..21007)
DNA (840bp) protein (280aa)
purine nucleoside phosphorylase I, inosine and guanosine-specific (EC:2.4.2.1)
Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; EC=2.4.2.1 {ECO:0000256|PIRNR:PIRNR000477, ECO:0000313|EMBL:CBL39603.1};; Inosine-guanosine phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
Purine nucleoside phosphorylase n=2 Tax=Clostridiales RepID=D4MW37_9FIRM
L1_007_000M1_scaffold_1028_22
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21190..21906
DNA (717bp) protein (239aa)
Response regulator receiver domain-containing protein n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5Z7R5_9FIRM
Response regulator receiver domain-containing protein {ECO:0000313|EMBL:CDA32754.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Response regulator of the LytR/AlgR family
L1_007_000M1_scaffold_1028_23
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21913..22728
DNA (816bp) protein (272aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VN18_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV15770.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
hypothetical protein
L1_007_000M1_scaffold_1028_24
unknown

Not on your lists

22722..23234
DNA (513bp) protein (171aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0P2G8_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL39601.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L1_007_000M1_scaffold_1028_25
unknown

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comp(23244..23600)
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=5 Tax=Clostridiales RepID=D4MW34_9FIRM
LSU ribosomal protein L20P
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L1_007_000M1_scaffold_1028_26
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(23630..23827)
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=5 Tax=Clostridiales RepID=D4MW33_9FIRM
LSU ribosomal protein L35P
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L1_007_000M1_scaffold_1028_27
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23884..24459)
DNA (576bp) protein (192aa)
Translation initiation factor IF-3 n=5 Tax=Clostridiales RepID=D4MW32_9FIRM
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
bacterial translation initiation factor 3 (bIF-3)
L1_007_000M1_scaffold_1028_28
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24626..25561)
DNA (936bp) protein (312aa)
Bacterial Ig-like domain-containing protein n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5Z7R0_9FIRM
Bacterial Ig-like domain-containing protein {ECO:0000313|EMBL:CDA32749.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Bacterial Ig-like domain (group 2).
L1_007_000M1_scaffold_1028_29
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25654..26874)
DNA (1221bp) protein (407aa)
Bacterial Ig-like domain-containing protein n=2 Tax=Lachnospiraceae RepID=E5VMX7_9FIRM
Bacterial group 2 Ig-like protein {ECO:0000313|EMBL:EKY23022.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
Bacterial Ig-like domain (group 2).
L1_007_000M1_scaffold_1028_30
unknown

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comp(26892..27608)
DNA (717bp) protein (239aa)
Capsular exopolysaccharide family n=2 Tax=Clostridiales RepID=D4MW29_9FIRM
capsular exopolysaccharide family
Capsular exopolysaccharide family {ECO:0000313|EMBL:CBL39595.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
Displaying items 1-30 of 36 in total

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