ggKbase home page

L1_007_000M1_scaffold_1629

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1629_1
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..1429
DNA (1428bp) protein (476aa)
Fibronectin type III domain-containing protein n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VIK7_9FIRM
Fibronectin type III domain-containing protein {ECO:0000313|EMBL:EFV17292.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
Fibronectin type III domain.
L1_007_000M1_scaffold_1629_2
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1490..1813)
DNA (324bp) protein (108aa)
DNA-directed RNA polymerase subunit delta domain protein n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1QC09_9FIRM
DNA-directed RNA polymerase subunit delta domain protein {ECO:0000313|EMBL:EKY25499.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
hypothetical protein
L1_007_000M1_scaffold_1629_3
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1951..2568
DNA (618bp) protein (206aa)
Ribose-5-phosphate isomerase {ECO:0000256|SAAS:SAAS00087684}; EC=5.3.1.6 {ECO:0000256|SAAS:SAAS00087684};; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
Ribose 5-phosphate isomerase A n=1 Tax=Clostridium sp. SS2/1 RepID=B0NWW0_9CLOT
ribose 5-phosphate isomerase
L1_007_000M1_scaffold_1629_4
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2587..3552
DNA (966bp) protein (322aa)
Oxidoreductase, NAD-binding domain protein n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1QC24_9FIRM
Oxidoreductase, NAD-binding domain protein {ECO:0000313|EMBL:EKY25501.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
Predicted dehydrogenases and related proteins
L1_007_000M1_scaffold_1629_5
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3680..4627
DNA (948bp) protein (316aa)
Mg2+ and Co2+ transporters n=4 Tax=Clostridiales RepID=D4N1F7_9FIRM
Mg2+ and Co2+ transporters
CorA-like protein {ECO:0000313|EMBL:EKY25502.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L1_007_000M1_scaffold_1629_6
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4640..5416)
DNA (777bp) protein (259aa)
RNA polymerase sigma factor n=4 Tax=Clostridiales RepID=D4N1F8_9FIRM
RNA polymerase, sigma subunit, RpsG/SigG
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L1_007_000M1_scaffold_1629_7
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5454..6392
DNA (939bp) protein (313aa)
Amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) n=3 Tax=Clostridiales RepID=D4N1F9_9FIRM
ABC transporter, substrate-binding protein, family 3 {ECO:0000313|EMBL:EKY25503.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L1_007_000M1_scaffold_1629_8
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6473..8245)
DNA (1773bp) protein (591aa)
Xaa-Pro aminopeptidase (EC:3.4.11.9)
Peptidase, M24 family n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1QCT9_9FIRM
Peptidase, M24 family {ECO:0000313|EMBL:EKY25505.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L1_007_000M1_scaffold_1629_9
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8464..9684
DNA (1221bp) protein (407aa)
6-phosphofructokinase (EC:2.7.1.11)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01978}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01978}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01978}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
6-phosphofructokinase n=5 Tax=Clostridiales RepID=D4N1G1_9FIRM
L1_007_000M1_scaffold_1629_10
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9720..10589)
DNA (870bp) protein (290aa)
Ribonuclease BN-like family protein n=3 Tax=Lachnospiraceae RepID=E5VIJ7_9FIRM
YihY family protein {ECO:0000313|EMBL:EKY25507.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
Predicted membrane protein
L1_007_000M1_scaffold_1629_11
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11006..11836
DNA (831bp) protein (277aa)
Transcription antiterminator LicT n=2 Tax=Clostridiales RepID=B0NWW8_9CLOT
Putative transcription antiterminator LicT {ECO:0000313|EMBL:EKY25508.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
licT; transcription antiterminator LicT
L1_007_000M1_scaffold_1629_12
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12061..13044
DNA (984bp) protein (328aa)
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB (EC:2.7.1.69)
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB n=5 Tax=Clostridiales RepID=D4N1G3_9FIRM
Putative PTS system mannose-specific EIIAB component {ECO:0000313|EMBL:EKY25510.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L1_007_000M1_scaffold_1629_13
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13077..13874
DNA (798bp) protein (266aa)
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC n=6 Tax=Firmicutes RepID=D4N1G4_9FIRM
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC
PTS system sorbose-specific iic component {ECO:0000313|EMBL:CDA32810.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L1_007_000M1_scaffold_1629_14
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13895..14809
DNA (915bp) protein (305aa)
PTS system, mannose/fructose/sorbose family, IID component n=3 Tax=Lachnospiraceae RepID=L1QD36_9FIRM
PTS system mannose/fructose/sorbose family IID component {ECO:0000313|EMBL:CDA32809.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
PTS system IID component, Man family (TC 4.A.6)
L1_007_000M1_scaffold_1629_15
unknown

Not on your lists

14977..15363
DNA (387bp) protein (129aa)
Uncharacterized protein conserved in bacteria n=4 Tax=Clostridiales RepID=D4N1G6_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBL38711.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L1_007_000M1_scaffold_1629_16
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15407..16342
DNA (936bp) protein (312aa)
mannose-6-phosphate isomerase, type 1 (EC:5.3.1.8)
Mannose-6-phosphate isomerase n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5ZUP4_9FIRM
Mannose-6-phosphate isomerase {ECO:0000313|EMBL:CDA32807.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L1_007_000M1_scaffold_1629_17
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16401..18491
DNA (2091bp) protein (697aa)
PTS system glucose subfamily IIA component n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5ZF93_9FIRM
PTS system glucose subfamily IIA component {ECO:0000313|EMBL:CDA32806.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
PTS system, glucose subfamily, IIA component
L1_007_000M1_scaffold_1629_18
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18658..19539
DNA (882bp) protein (294aa)
Integral membrane protein DUF6 n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VII8_9FIRM
Integral membrane protein DUF6 {ECO:0000313|EMBL:EFV17273.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
Permeases of the drug/metabolite transporter (DMT) superfamily
L1_007_000M1_scaffold_1629_19
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


19862..20881
DNA (1020bp) protein (340aa)
phenylalanyl-tRNA synthetase, alpha subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
Phenylalanine--tRNA ligase alpha subunit n=5 Tax=Clostridiales RepID=D4N1H3_9FIRM
L1_007_000M1_scaffold_1629_20
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20938..22074
DNA (1137bp) protein (379aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
phenylalanyl-tRNA synthetase beta subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1QC26_9FIRM
Displaying 20 items

View Taxonomy