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L1_007_000M1_scaffold_1432

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1432_1
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(144..3395)
DNA (3252bp) protein (1084aa)
Diguanylate cyclase (GGDEF) domain n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPR6_9FIRM
Diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CDD79936.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
diguanylate cyclase (GGDEF) domain
L1_007_000M1_scaffold_1432_2
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3605..4561
DNA (957bp) protein (319aa)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
ketopantoate reductase (EC:1.1.1.169)
2-dehydropantoate 2-reductase n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MGN5_9FIRM
L1_007_000M1_scaffold_1432_3
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4663..7452)
DNA (2790bp) protein (930aa)
putative xanthine dehydrogenase subunit D (XDHasesubunit D) (EC:1.17.1.4)
Putative selenium-dependent molybdenum hydroxylase 1 n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P0Z8_9FIRM
Putative selenium-dependent molybdenum hydroxylase 1 {ECO:0000313|EMBL:EDM98019.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L1_007_000M1_scaffold_1432_4
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7473..9017)
DNA (1545bp) protein (515aa)
Transporter, SSS family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P0J3_9FIRM
Transporter, SSS family {ECO:0000313|EMBL:EDM98125.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
SSS sodium solute transporter superfamily protein
L1_007_000M1_scaffold_1432_5
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9033..9302)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P0J4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM98126.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L1_007_000M1_scaffold_1432_6

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comp(9349..10023)
DNA (675bp) protein (225aa)
Isochorismatase hydrolase (Fragment) n=1 Tax=human gut metagenome RepID=K1SC89_9ZZZZ
Isochorismatase hydrolase {ECO:0000313|EMBL:EKC58387.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
isochorismatase family protein
L1_007_000M1_scaffold_1432_7
unknown

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10448..10579
DNA (132bp) protein (44aa)

This feature has no annotations

L1_007_000M1_scaffold_1432_8
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11401..11985)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GZQ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB26701.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
cas4; hypothetical protein
L1_007_000M1_scaffold_1432_9
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12066..12953)
DNA (888bp) protein (296aa)
CRISPR-associated protein Csd2 family n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HL59_9FIRM
CRISPR-associated protein Csd2 family {ECO:0000313|EMBL:CDB26702.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
CRISPR-associated protein, Csd2 family
L1_007_000M1_scaffold_1432_10
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12954..14684)
DNA (1731bp) protein (577aa)
CRISPR-associated protein Csd1 family n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GML8_9FIRM
CRISPR-associated protein Csd1 family {ECO:0000313|EMBL:CDB26703.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
CRISPR-associated protein, Csd1 family
L1_007_000M1_scaffold_1432_11
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14681..15343)
DNA (663bp) protein (221aa)
CRISPR-associated protein Cas5 Dvulg subtype n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GY93_9FIRM
CRISPR-associated protein Cas5 Dvulg subtype {ECO:0000313|EMBL:CDB26704.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L1_007_000M1_scaffold_1432_12
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15693..17870)
DNA (2178bp) protein (726aa)
CRISPR-associated endonuclease Cas3-HD n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GQJ9_9FIRM
CRISPR-associated endonuclease Cas3-HD {ECO:0000313|EMBL:CDB26705.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
putative helicase
L1_007_000M1_scaffold_1432_13
Oribacterium sp. oral taxon 078, Oribacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18360..19406
DNA (1047bp) protein (349aa)
Methionine import ATP-binding protein MetN {ECO:0000256|HAMAP-Rule:MF_01719}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01719};; TaxID=1321782 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Oribacterium.;" source="Oribacterium sp. oral taxon 078 str. F0263.;"
ABC transporter, ATP-binding protein n=1 Tax=Oribacterium sp. oral taxon 078 str. F0263 RepID=U2UVH3_9FIRM
putative methionine ABC transporter ATP-binding protein
L1_007_000M1_scaffold_1432_14
Oribacterium sp. oral taxon 078, Oribacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19387..20067
DNA (681bp) protein (227aa)
ABC transporter, permease protein n=1 Tax=Oribacterium sp. oral taxon 078 str. F0262 RepID=D4CQM5_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EFE90590.1}; TaxID=608534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Oribacterium.;" source="Oribacterium sp. oral taxon 078 str. F0262.;"
ABC-type metal ion transport system, permease component
L1_007_000M1_scaffold_1432_15
Oribacterium sp. oral taxon 078, Oribacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20080..21033
DNA (954bp) protein (318aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=1321782 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Oribacterium.;" source="Oribacterium sp. oral taxon 078 str. F0263.;"
L-lactate dehydrogenase n=1 Tax=Oribacterium sp. oral taxon 078 str. F0262 RepID=D4CQM4_9FIRM
L-lactate dehydrogenase
L1_007_000M1_scaffold_1432_16
Oribacterium sp. oral taxon 078, Oribacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21081..21854
DNA (774bp) protein (258aa)
Lipoprotein n=1 Tax=Oribacterium sp. oral taxon 078 str. F0263 RepID=U2UV08_9FIRM
Lipoprotein {ECO:0000256|PIRNR:PIRNR002854}; TaxID=1321782 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Oribacterium.;" source="Oribacterium sp. oral taxon 078 str. F0263.;"
ABC-type metal ion transport system, periplasmic component/surface antigen
Displaying 16 items

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