ggKbase home page

L1_007_000M1_scaffold_1915

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1915_1
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..546
DNA (546bp) protein (182aa)
Sugar (Pentulose and hexulose) kinases n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DKV6_CLOSC
Sugar (pentulose and hexulose) kinases
Sugar (Pentulose and hexulose) kinases {ECO:0000313|EMBL:CBK78330.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L1_007_000M1_scaffold_1915_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

581..2056
DNA (1476bp) protein (492aa)
L-arabinose isomerase {ECO:0000256|HAMAP-Rule:MF_00519, ECO:0000256|SAAS:SAAS00008909}; EC=5.3.1.4 {ECO:0000256|HAMAP-Rule:MF_00519, ECO:0000256|SAAS:SAAS00008909};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L-arabinose isomerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PI57_9FIRM
L-arabinose isomerase
L1_007_000M1_scaffold_1915_3
BJP_IG2069_Clostridiales_48_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2073..2768
DNA (696bp) protein (232aa)
L-ribulose 5-phosphate 4-epimerase (EC:5.1.3.4)
L-ribulose-5-phosphate 4-epimerase n=1 Tax=Lachnospiraceae bacterium NK4A179 RepID=UPI0003B5C7F8
Tax=BJP_IG2069_Clostridiales_48_15
L1_007_000M1_scaffold_1915_4
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2882..4171
DNA (1290bp) protein (430aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00036A145D
Uncharacterized protein {ECO:0000313|EMBL:EHE97779.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
ABC-type sugar transporter periplasmic component
L1_007_000M1_scaffold_1915_5
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4309..5160
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI0003681ADF
Uncharacterized protein {ECO:0000313|EMBL:EHE97780.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
sugar ABC transporter permease
L1_007_000M1_scaffold_1915_6
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5177..6019
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00037F3681
Uncharacterized protein {ECO:0000313|EMBL:EHE97781.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
binding-protein-dependent transport systems inner membrane component
L1_007_000M1_scaffold_1915_7
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6032..8146
DNA (2115bp) protein (705aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI000377A804
glycoside hydrolase clan GH-D
Glycoside hydrolase clan GH-D {ECO:0000313|EMBL:ADL52223.1}; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /; 743B).;"
L1_007_000M1_scaffold_1915_8
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8161..9276
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VRP7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ35430.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-)
L1_007_000M1_scaffold_1915_9
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9424..9600)
DNA (177bp) protein (59aa)
Excisionase family DNA binding domain-containing protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VTU3_9CLOT
Excisionase family DNA binding domain-containing protein {ECO:0000313|EMBL:EOQ35884.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
excisionase family DNA binding domain-containing protein
L1_007_000M1_scaffold_1915_10
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9793..10779)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VSY4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ35638.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
L1_007_000M1_scaffold_1915_11
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10776..11984)
DNA (1209bp) protein (403aa)
RecQ family ATP-dependent DNA helicase n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VXI2_9CLOT
RecQ family ATP-dependent DNA helicase {ECO:0000313|EMBL:EOQ35637.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
ATP-dependent DNA helicase RecQ
L1_007_000M1_scaffold_1915_12
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

12340..13650
DNA (1311bp) protein (437aa)
Divergent AAA domain protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y3D8_9FIRM
Divergent AAA domain protein {ECO:0000313|EMBL:EEF69502.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
putative transcriptional regulator with HTH domain
L1_007_000M1_scaffold_1915_13
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(13962..15236)
DNA (1275bp) protein (425aa)
Na+/H+-dicarboxylate symporters n=1 Tax=Firmicutes bacterium CAG:536 RepID=R5Z1V0_9FIRM
Sodium:dicarboxylate symport protein {ECO:0000313|EMBL:CRH83992.1}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
Na+/H+-dicarboxylate symporters
L1_007_000M1_scaffold_1915_14
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15233..16096)
DNA (864bp) protein (288aa)
dTDP-4-dehydrorhamnose reductase n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VRZ9_9CLOT
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:EOQ35308.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
dTDP-4-dehydrorhamnose reductase
L1_007_000M1_scaffold_1915_15
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16639..17409
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W9D0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ41319.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
Uncharacterized protein involved in copper resistance
L1_007_000M1_scaffold_1915_16
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17406..18251
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8WA22_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ39982.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
licT; transcription antiterminator LicT
L1_007_000M1_scaffold_1915_17
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18617..19108
DNA (492bp) protein (164aa)
PTS system, glucose subfamily, IIA component n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W561_9CLOT
PTS system, glucose subfamily, IIA component {ECO:0000313|EMBL:EOQ39978.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
PTS system IIA component, Glc family (TC 4.A.1)
L1_007_000M1_scaffold_1915_18
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19128..19385
DNA (258bp) protein (86aa)
HPr family phosphocarrier n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IUS8_9FIRM
HPr family phosphocarrier {ECO:0000313|EMBL:EOS25608.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
phosphotransferase system, phosphocarrier protein HPr
L1_007_000M1_scaffold_1915_19
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19509..20990
DNA (1482bp) protein (494aa)
Putative PTS system, N-acetylglucosamine-specific IIBC component n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H1G9_9FIRM
Putative PTS system, N-acetylglucosamine-specific IIBC component {ECO:0000313|EMBL:EEU98179.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2)
L1_007_000M1_scaffold_1915_20
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21194..21931
DNA (738bp) protein (246aa)
Glucosamine-6-phosphate deaminase {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029492}; EC=3.5.99.6 {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029496};; GlcN6P deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; Glucosamine-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01241}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Glucosamine-6-phosphate deaminase n=1 Tax=Dorea longicatena CAG:42 RepID=R7FZB8_9FIRM
glucosamine-6-phosphate deaminase
L1_007_000M1_scaffold_1915_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21947..23059
DNA (1113bp) protein (371aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Clostridium difficile F501 RepID=T4BEF6_CLODI
N-acetylglucosamine-6-phosphate deacetylase
L1_007_000M1_scaffold_1915_22
Coprococcus eutactus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23161..23565)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SV18_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDP26038.1}; TaxID=411474 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus eutactus ATCC 27759.;"
hypothetical protein
L1_007_000M1_scaffold_1915_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23626..24204)
DNA (579bp) protein (193aa)
Nitrilotriacetate monooxygenase component B n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBK8_9FIRM
Nitrilotriacetate monooxygenase component B {ECO:0000313|EMBL:CCZ78112.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
L1_007_000M1_scaffold_1915_24
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24262..25452)
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6URW8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC73492.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
hypothetical protein
L1_007_000M1_scaffold_1915_25
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26586..26984)
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Bacillus subtilis RepID=UPI0002FD21B5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEG94622.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
L1_007_000M1_scaffold_1915_26
unknown

Not on your lists

comp(27039..27524)
DNA (486bp) protein (162aa)

This feature has no annotations

L1_007_000M1_scaffold_1915_27
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27521..27628)
DNA (108bp) protein (36aa)
Putative agmatine deiminase {ECO:0000256|HAMAP-Rule:MF_01841}; EC=3.5.3.12 {ECO:0000256|HAMAP-Rule:MF_01841};; Agmatine iminohydrolase {ECO:0000256|HAMAP-Rule:MF_01841}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
Putative agmatine deiminase n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7GS14_9FIRM
L1_007_000M1_scaffold_1915_28
unknown

Not on your lists

27688..27858
DNA (171bp) protein (57aa)

This feature has no annotations

L1_007_000M1_scaffold_1915_29
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28021..28362
DNA (342bp) protein (114aa)
Two component transcriptional regulator, AraC family n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JLF5_CELLD
AraC family transcriptional regulator
Two component transcriptional regulator, AraC family {ECO:0000313|EMBL:ADZ82243.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
Displaying 29 items

View Taxonomy