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L1_007_029G1_scaffold_35

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_029G1_scaffold_35_1
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2..1444
DNA (1443bp) protein (481aa)
Histidine--tRNA ligase {ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|SAAS:SAAS00043629};; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5N335_9BIFI
L1_007_029G1_scaffold_35_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


1480..3108
DNA (1629bp) protein (543aa)
Aspartate--tRNA ligase {ECO:0000313|EMBL:EIJ28073.1}; EC=6.1.1.- {ECO:0000313|EMBL:EIJ28073.1};; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
Aspartate--tRNA ligase n=3 Tax=Bifidobacterium RepID=SYD_BIFLO
aspS; aspartyl-tRNA synthetase
L1_007_029G1_scaffold_35_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3566..4537)
DNA (972bp) protein (324aa)
Uncharacterized protein n=14 Tax=Bifidobacterium RepID=Q8G862_BIFLO
Protein of unknown function (DUF559).
Uncharacterized protein {ECO:0000313|EMBL:AAN23886.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L1_007_029G1_scaffold_35_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5146..5916
DNA (771bp) protein (257aa)
ABC transporter family protein {ECO:0000313|EMBL:CCK35389.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCK35389.1};; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
ABC transporter, ATP-binding protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=C2GVY6_BIFLN
glutamate ABC transporter ATP-binding protein
L1_007_029G1_scaffold_35_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5948..6787
DNA (840bp) protein (280aa)
Bacterial extracellular solute-binding s, 3 family protein n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2I382_BIFLN
Bacterial extracellular solute-binding s, 3 family protein {ECO:0000313|EMBL:CCK35388.1}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
hisJ1; hisj1
L1_007_029G1_scaffold_35_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6787..7464
DNA (678bp) protein (226aa)
ABC-type amino acid transport system permease component n=11 Tax=Bifidobacterium RepID=B3DPM4_BIFLD
amino acid ABC transporter membrane protein 1, PAAT family (TC 3.A.1.3.-)
Glutamate transport system permease protein gluC {ECO:0000313|EMBL:ESV33975.1}; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
L1_007_029G1_scaffold_35_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7470..8570
DNA (1101bp) protein (367aa)
Glutamate ABC transporter permease component n=7 Tax=Bifidobacterium longum RepID=E8MEG7_BIFL2
ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:AIW44074.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L1_007_029G1_scaffold_35_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8668..10188
DNA (1521bp) protein (507aa)
PAP2 domain protein n=1 Tax=Bifidobacterium longum subsp. longum 44B RepID=I3BEK0_BIFLN
PAP2 domain protein {ECO:0000313|EMBL:EIJ29793.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
hypothetical protein
L1_007_029G1_scaffold_35_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10750..11070
DNA (321bp) protein (107aa)
Uncharacterized protein n=5 Tax=Bifidobacterium RepID=C5EDT0_BIFLI
Uncharacterized protein {ECO:0000313|EMBL:EEQ56174.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
hypothetical protein
L1_007_029G1_scaffold_35_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11136..12209
DNA (1074bp) protein (358aa)
Polyphosphate:nucleotide phosphotransferase, PPK2 family {ECO:0000313|EMBL:EIJ24906.1}; EC=2.7.4.- {ECO:0000313|EMBL:EIJ24906.1};; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
Uncharacterized conserved protein n=6 Tax=Bifidobacterium longum RepID=D6DBF9_BIFLN
hypothetical protein
L1_007_029G1_scaffold_35_11
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12343..14910
DNA (2568bp) protein (856aa)
DEAD box family helicase n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5NGV3_9BIFI
DEAD box family helicase {ECO:0000313|EMBL:CCY96531.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
superfamily ii helicase
L1_007_029G1_scaffold_35_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14993..16372
DNA (1380bp) protein (460aa)
ATPase for Holliday junction resolvase n=3 Tax=Bifidobacterium longum RepID=B3DPP3_BIFLD
recombination factor protein RarA
Putative GTP-binding protein {ECO:0000313|EMBL:AAP86675.1}; TaxID=1682 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis.;"
L1_007_029G1_scaffold_35_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16431..17153
DNA (723bp) protein (241aa)
Response regulator n=12 Tax=Bifidobacterium RepID=E4R129_BIFLM
two-component response regulator
Transcriptional regulator {ECO:0000313|EMBL:KEY33605.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L1_007_029G1_scaffold_35_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17150..18847
DNA (1698bp) protein (566aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Signal transduction histidine kinase n=9 Tax=Bifidobacterium RepID=D6DBF5_BIFLN
two-component sensor kinase
L1_007_029G1_scaffold_35_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18844..20574
DNA (1731bp) protein (577aa)
Lipoprotein LpqB n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GVZ9_BIFLN
Lipoprotein LpqB {ECO:0000256|HAMAP-Rule:MF_01373}; Flags: Precursor;; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
hypothetical protein
L1_007_029G1_scaffold_35_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20890..21873
DNA (984bp) protein (328aa)
Periplasmic binding protein and sugar binding domain of the LacI family protein n=3 Tax=Bifidobacterium longum subsp. longum RepID=I3AWT2_BIFLN
Periplasmic binding protein and sugar binding domain of the LacI family protein {ECO:0000313|EMBL:EIJ23575.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
sugar ABC transporter substrate-binding protein
L1_007_029G1_scaffold_35_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22014..23555
DNA (1542bp) protein (514aa)
ABC-type sugar transport system ATPase component n=19 Tax=Bifidobacterium RepID=B3DPP8_BIFLD
sugar ABC transporter ATP-binding protein
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KEY21688.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L1_007_029G1_scaffold_35_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23557..24627
DNA (1071bp) protein (357aa)
Monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-) n=17 Tax=Bifidobacterium RepID=D6DBF1_BIFLN
sugar ABC transporter permease
Sugar ABC transporter permease {ECO:0000313|EMBL:KEY21689.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L1_007_029G1_scaffold_35_19
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24624..25646
DNA (1023bp) protein (341aa)
ABC-type ribose/xylose/arabinose/galactoside transport systems permease component n=16 Tax=Bifidobacterium RepID=B3DPQ0_BIFLD
sugar ABC transporter permease
Probable ABC transporter permease protein for sugars {ECO:0000313|EMBL:CCY95149.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_007_029G1_scaffold_35_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25872..27329)
DNA (1458bp) protein (486aa)
Arabinose efflux permease n=1 Tax=Bifidobacterium longum subsp. longum F8 RepID=D6DBF0_BIFLN
Arabinose efflux permease
Arabinose efflux permease {ECO:0000313|EMBL:CBK69821.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L1_007_029G1_scaffold_35_21
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27628..28614
DNA (987bp) protein (329aa)
Phosphoglycerate dehydrogenase n=11 Tax=Bifidobacterium RepID=B3DPQ2_BIFLD
serA1; sera1
SerA1 {ECO:0000313|EMBL:CCY95147.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_007_029G1_scaffold_35_22
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28739..29158)
DNA (420bp) protein (140aa)
Membrane-anchored glycerophosphoryl diester phosphodiesterase-like protein n=15 Tax=Bifidobacterium RepID=B3DPQ3_BIFLD
glycerophosphoryl diesterphosphodiesterase
Uncharacterized protein {ECO:0000313|EMBL:CCY95146.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_007_029G1_scaffold_35_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29584..30264)
DNA (681bp) protein (227aa)
TM2 domain-containing protein n=1 Tax=Bifidobacterium longum subsp. longum KACC 91563 RepID=F8ATZ9_BIFLN
TM2 domain protein {ECO:0000313|EMBL:EEI80612.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
hypothetical protein
L1_007_029G1_scaffold_35_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30311..30676
DNA (366bp) protein (122aa)
Uncharacterized protein n=16 Tax=Bifidobacterium RepID=Q8G840_BIFLO
hypothetical protein
Membrane protein {ECO:0000313|EMBL:KEY21695.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L1_007_029G1_scaffold_35_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30775..31080)
DNA (306bp) protein (102aa)
Uncharacterized protein n=18 Tax=Bifidobacterium RepID=Q8G839_BIFLO
hypothetical protein
Predicted RNA-binding protein containing KH domain, possibly ribosomal protein {ECO:0000313|EMBL:CBK69816.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L1_007_029G1_scaffold_35_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31152..33584)
DNA (2433bp) protein (811aa)
ATPase component of ABC-type transport systems n=15 Tax=Bifidobacterium RepID=B3DPQ7_BIFLD
Fused ATP binding protein and permease of ABC transporter {ECO:0000313|EMBL:BAP83986.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
ABC transporter ATP-binding protein
L1_007_029G1_scaffold_35_27
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33715..34368)
DNA (654bp) protein (218aa)
Uncharacterized protein n=18 Tax=Bifidobacterium RepID=Q8G837_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCY95141.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_007_029G1_scaffold_35_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34611..35633
DNA (1023bp) protein (341aa)
Predicted glycosyltransferases n=15 Tax=Bifidobacterium RepID=D6DBE2_BIFLN
glycosyltransferase
Putative glycosyltransferase {ECO:0000313|EMBL:BAJ71588.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L1_007_029G1_scaffold_35_29
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35675..36469)
DNA (795bp) protein (265aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum KACC 91563 RepID=F8AU05_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCY95139.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_007_029G1_scaffold_35_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36706..37473
DNA (768bp) protein (256aa)
Polyphosphate glucokinase n=18 Tax=Bifidobacterium RepID=D6DBE0_BIFLN
glucokinase
Polyphosphate glucokinase {ECO:0000313|EMBL:KEY33621.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
Displaying items 1-30 of 54 in total

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