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L1_007_029G1_scaffold_146

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_029G1_scaffold_146_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


2..178
DNA (177bp) protein (59aa)
30S ribosomal protein S13 n=5 Tax=Bifidobacterium breve RepID=F9XYA2_BIFBU
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
L1_007_029G1_scaffold_146_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


266..664
DNA (399bp) protein (133aa)
30S ribosomal protein S11 n=26 Tax=Bifidobacterium RepID=RS11_BIFLD
rpsK; SSU ribosomal protein S11P
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L1_007_029G1_scaffold_146_3
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

744..1739
DNA (996bp) protein (332aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
DNA-directed RNA polymerase subunit alpha n=6 Tax=Bifidobacterium breve RepID=F6C798_BIFBA
DNA-directed RNA polymerase alpha chain
L1_007_029G1_scaffold_146_4
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


1836..2369
DNA (534bp) protein (178aa)
50S ribosomal protein L17 n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3KZ63_BIFBR
50S ribosomal protein L17
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L1_007_029G1_scaffold_146_5
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2538..3449
DNA (912bp) protein (304aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
tRNA pseudouridine synthase A n=6 Tax=Bifidobacterium breve RepID=F6C796_BIFBA
tRNA pseudouridine synthase A
L1_007_029G1_scaffold_146_6
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3610..5790
DNA (2181bp) protein (727aa)
Uncharacterized protein n=4 Tax=Bifidobacterium breve RepID=F6C795_BIFBA
Uncharacterized protein {ECO:0000313|EMBL:EPD75941.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Conserved hypothetical protein with DUF404 and DUF407 domains
L1_007_029G1_scaffold_146_7
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5936..6736
DNA (801bp) protein (267aa)
Transglutaminase-like protein n=3 Tax=Bifidobacterium breve RepID=F6C794_BIFBA
Hypothetical protein in transglutaminase family
Uncharacterized protein {ECO:0000313|EMBL:ABE96280.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L1_007_029G1_scaffold_146_8
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6949..7749
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S3AHV1_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EPD75939.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Transcriptional regulator, LacI family
L1_007_029G1_scaffold_146_9
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7806..8534)
DNA (729bp) protein (243aa)
Uncharacterized protein n=3 Tax=Bifidobacterium breve RepID=H3KZ67_BIFBR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPD75938.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_007_029G1_scaffold_146_10
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8738..9793
DNA (1056bp) protein (352aa)
Transcription termination factor NusA n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3KZ68_BIFBR
nusA; N utilization substance protein A
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_007_029G1_scaffold_146_11
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10069..12891
DNA (2823bp) protein (941aa)
Translation initiation factor IF-2 n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZHN7_BIFBR
infB; Bacterial Protein Translation Initiation Factor 2 (IF-2)
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_007_029G1_scaffold_146_12
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13160..13645
DNA (486bp) protein (162aa)
Ribosome-binding factor A n=3 Tax=Bifidobacterium breve RepID=D4BQU7_BIFBR
Ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_007_029G1_scaffold_146_13
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13704..14891
DNA (1188bp) protein (396aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
truB; tRNA pseudouridine synthase B (EC:4.2.1.70)
tRNA pseudouridine synthase B n=1 Tax=Bifidobacterium breve HPH0326 RepID=S3AHT3_BIFBR
L1_007_029G1_scaffold_146_14
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14946..16070
DNA (1125bp) protein (375aa)
Riboflavin biosynthesis protein RibF n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZGP5_BIFBR
Riboflavin biosynthesis protein RibF {ECO:0000313|EMBL:EPD75933.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
riboflavin kinase
L1_007_029G1_scaffold_146_15
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16080..17579)
DNA (1500bp) protein (500aa)
DNA repair protein RadA n=2 Tax=Bifidobacterium breve RepID=F6C785_BIFBA
DNA repair protein radA
DNA repair protein radA {ECO:0000313|EMBL:AHJ21794.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_007_029G1_scaffold_146_16
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17699..18322
DNA (624bp) protein (208aa)
Uncharacterized protein n=4 Tax=Bifidobacterium breve RepID=D4BQV1_BIFBR
Conserved hypothetical secreted protein
Uncharacterized protein {ECO:0000313|EMBL:EFE88596.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_007_029G1_scaffold_146_17
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18472..18561
DNA (90bp) protein (30aa)
Uncharacterized protein n=16 Tax=Bifidobacterium RepID=B3DQF6_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI95902.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
L1_007_029G1_scaffold_146_18
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18751..19449)
DNA (699bp) protein (233aa)
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00020824}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00087684};; Phosphoriboisomerase A {ECO:0000256|HAMAP-Rule:MF_00170}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
Ribose-5-phosphate isomerase A n=6 Tax=Bifidobacterium breve RepID=F6C783_BIFBA
Ribose 5-phosphate isomerase
L1_007_029G1_scaffold_146_19
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19580..20677)
DNA (1098bp) protein (366aa)
Ribonuclease HI n=2 Tax=Bifidobacterium breve RepID=F6C782_BIFBA
Ribonuclease HI
Ribonuclease HI {ECO:0000313|EMBL:AHJ21791.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_007_029G1_scaffold_146_20
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20732..22240)
DNA (1509bp) protein (503aa)
pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Bifidobacterium breve RepID=UPI000303B265
Pyridine nucleotide-disulfide oxidoreductase family protein
Uncharacterized protein {ECO:0000313|EMBL:EPD75927.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_007_029G1_scaffold_146_21
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22519..22950)
DNA (432bp) protein (144aa)
Transcriptional regulator n=2 Tax=Bifidobacterium breve RepID=F6C780_BIFBA
Rrf2 family protein
Transcriptional regulator {ECO:0000313|EMBL:AEF27048.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L1_007_029G1_scaffold_146_22
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23245..24213
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZNG0_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EPD75925.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
hypothetical protein
L1_007_029G1_scaffold_146_23
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24797..26473)
DNA (1677bp) protein (559aa)
Phosphoglucomutase, alpha-D-glucose phosphate-specific {ECO:0000313|EMBL:AEF27305.1}; EC=5.4.2.2 {ECO:0000313|EMBL:AEF27305.1};; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
Phosphoglucomutase n=4 Tax=Bifidobacterium breve RepID=F9XY05_BIFBU
Phosphoglucomutase
L1_007_029G1_scaffold_146_24
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26969..29059
DNA (2091bp) protein (697aa)
PTS system, fructose/glucose-specific IIABC component {ECO:0000313|EMBL:ABE96263.1}; EC=2.7.1.69 {ECO:0000313|EMBL:ABE96263.1};; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
PTS system, fructose/glucose-specific IIABC component n=2 Tax=Bifidobacterium breve RepID=F9XY04_BIFBU
PTS system, fructose/glucose-specific IIABC component
L1_007_029G1_scaffold_146_25
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29111..30004
DNA (894bp) protein (298aa)
PRD domain protein n=2 Tax=Bifidobacterium breve RepID=D4BQW1_BIFBR
Transcription antiterminator, BglG family
PRD domain protein {ECO:0000313|EMBL:EFE88606.1}; Transcription antiterminator {ECO:0000313|EMBL:BAR00631.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_007_029G1_scaffold_146_26
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30006..31256)
DNA (1251bp) protein (417aa)
Diacylglycerol kinase catalytic domain protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CRQ5_BIFBR
Diacylglycerol kinase catalytic domain protein {ECO:0000313|EMBL:ERI86738.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
diacylglycerol kinase
L1_007_029G1_scaffold_146_27
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31355..32713
DNA (1359bp) protein (453aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Serine--tRNA ligase n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2C8D2_BIFBR
Seryl-tRNA synthetase
L1_007_029G1_scaffold_146_28
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33186..33431
DNA (246bp) protein (82aa)
Solute-binding protein of ABC transporter system for sugars n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9XY00_BIFBU
Solute-binding protein of ABC transporter system for sugars
ABC transporter, solute-binding protein {ECO:0000313|EMBL:AEF27303.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
Displaying 28 items

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