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L1_007_029G1_scaffold_174

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_029G1_scaffold_174_1
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1..246)
DNA (246bp) protein (82aa)
UPF0297 protein LOCK908_0762 n=1 Tax=Lactobacillus rhamnosus LOCK908 RepID=S5A2V9_LACRH
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase
UPF0297 protein LOCK908_0762 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L1_007_029G1_scaffold_174_2
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(350..1453)
DNA (1104bp) protein (368aa)
Uncharacterized protein n=3 Tax=Lactobacillus rhamnosus RepID=S5A9L8_LACRH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIC97552.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L1_007_029G1_scaffold_174_3
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(1605..4250)
DNA (2646bp) protein (882aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
Alanine--tRNA ligase n=3 Tax=Lactobacillus rhamnosus RepID=S5A017_LACRH
Alanyl-tRNA synthetase
L1_007_029G1_scaffold_174_4
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4389..4733)
DNA (345bp) protein (115aa)
Conserved protein n=4 Tax=Lactobacillus rhamnosus RepID=C7THB5_LACRL
hypothetical protein
ATP-dependent nuclease {ECO:0000313|EMBL:KIC97554.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L1_007_029G1_scaffold_174_5
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4949..5884)
DNA (936bp) protein (312aa)
Conserved protein n=4 Tax=Lactobacillus rhamnosus RepID=C7THB4_LACRL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP73439.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L1_007_029G1_scaffold_174_6
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5889..7235)
DNA (1347bp) protein (449aa)
ATP-dependent RNA helicase n=5 Tax=Lactobacillus rhamnosus RepID=C7THB3_LACRL
ATP-dependent RNA helicase YqfR
DEAD/DEAH box helicase {ECO:0000313|EMBL:KIC97556.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L1_007_029G1_scaffold_174_7
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7241..8197)
DNA (957bp) protein (319aa)
Phosphoesterase, DHH family protein n=4 Tax=Lactobacillus rhamnosus RepID=C7THB2_LACRL
ytqI; phosphoesterase, DHH family protein
Oligoribonuclease {ECO:0000313|EMBL:KIC97557.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L1_007_029G1_scaffold_174_8
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8204..9517)
DNA (1314bp) protein (438aa)
Transcriptional regulator with CBS domains n=7 Tax=Lactobacillus rhamnosus RepID=B5QMM6_LACRH
transcriptional regulator
Thioesterase {ECO:0000313|EMBL:KIC97558.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L1_007_029G1_scaffold_174_9
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10117..11220)
DNA (1104bp) protein (368aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
DNA polymerase IV n=8 Tax=Lactobacillus rhamnosus RepID=C7THB0_LACRL
dinB; DNA polymerase IV
L1_007_029G1_scaffold_174_10
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11750..13237)
DNA (1488bp) protein (496aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
Glucose-6-phosphate 1-dehydrogenase n=5 Tax=Lactobacillus rhamnosus RepID=C7THA9_LACRL
zwf; glucose-6-phosphate 1-dehydrogenase
L1_007_029G1_scaffold_174_11
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13267..13911)
DNA (645bp) protein (215aa)
Mn-dependent transcriptional regulator n=12 Tax=Lactobacillus rhamnosus RepID=B5QMM3_LACRH
sirR; FeoA family iron-dependent transcriptional regulator
Iron-dependent transcriptional regulator, FeoA family {ECO:0000313|EMBL:CAR86654.1}; Transcriptional regulator {ECO:0000313|EMBL:BAI41263.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L1_007_029G1_scaffold_174_12
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14072..16678)
DNA (2607bp) protein (869aa)
Aldehyde-alcohol dehydrogenase n=10 Tax=Lactobacillus rhamnosus RepID=C7THA6_LACRL
3-dehydroquinate synthase
Aldehyde-alcohol dehydrogenase {ECO:0000256|PIRNR:PIRNR000111}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L1_007_029G1_scaffold_174_13
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16922..17407)
DNA (486bp) protein (162aa)
Preprotein translocase subunit YajC n=1 Tax=Lactobacillus rhamnosus (strain ATCC 53103 / GG) RepID=C8USA7_LACRG
preprotein translocase subunit YajC
Preprotein translocase subunit YajC {ECO:0000313|EMBL:BAI41261.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L1_007_029G1_scaffold_174_14
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17420..18562)
DNA (1143bp) protein (381aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; Queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
Queuine tRNA-ribosyltransferase n=5 Tax=Lactobacillus rhamnosus RepID=C7THA4_LACRL
tgt; Queuine tRNA-ribosyltransferase
L1_007_029G1_scaffold_174_15
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19053..20138)
DNA (1086bp) protein (362aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=6 Tax=Lactobacillus rhamnosus RepID=C8USA5_LACRG
S-adenosylmethionine:tRNA-ribosyltransferase-isomerase
L1_007_029G1_scaffold_174_16
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20148..21194)
DNA (1047bp) protein (349aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
Holliday junction ATP-dependent DNA helicase RuvB n=10 Tax=Lactobacillus rhamnosus RepID=B5QML8_LACRH
ruvB; Holliday junction DNA helicase RuvB
L1_007_029G1_scaffold_174_17
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21270..21866)
DNA (597bp) protein (199aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
Holliday junction ATP-dependent DNA helicase RuvA n=11 Tax=Lactobacillus rhamnosus RepID=B5QML7_LACRH
ruvA; Holliday junction DNA helicase RuvA
L1_007_029G1_scaffold_174_18
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21958..22554
DNA (597bp) protein (199aa)
Snare associated golgi protein n=6 Tax=Lactobacillus rhamnosus RepID=C7THA0_LACRL
yjbF; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP73425.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L1_007_029G1_scaffold_174_19
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22640..23113)
DNA (474bp) protein (158aa)
S-ribosylhomocysteine lyase {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059628};; AI-2 synthesis protein {ECO:0000256|HAMAP-Rule:MF_00091}; Autoinducer-2 production protein LuxS {ECO:0000256|HAMAP-Rule:MF_00091}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
S-ribosylhomocysteine lyase n=14 Tax=Lactobacillus rhamnosus RepID=B5QML5_LACRH
luxS; S-ribosylhomocysteinase
L1_007_029G1_scaffold_174_20
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23248..24381)
DNA (1134bp) protein (378aa)
Methionine synthase, vitamin-B12 independent {ECO:0000313|EMBL:EEN78824.1}; EC=2.1.1.14 {ECO:0000313|EMBL:EEN78824.1};; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
Methionine synthase, vitamin-B12 independent domain protein n=5 Tax=Lactobacillus rhamnosus RepID=S5A2U9_LACRH
cobalamin-independent synthase, Catalytic domain protein
L1_007_029G1_scaffold_174_21
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

25268..25729
DNA (462bp) protein (154aa)
Conserved protein n=9 Tax=Lactobacillus rhamnosus RepID=C7TAK0_LACRG
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKS54171.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L1_007_029G1_scaffold_174_22
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

25740..26387
DNA (648bp) protein (216aa)
Conserved membrane protein n=3 Tax=Lactobacillus rhamnosus RepID=C7TH96_LACRL
yviA; membrane protein
Membrane protein {ECO:0000313|EMBL:KIC97445.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L1_007_029G1_scaffold_174_23
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26397..27242)
DNA (846bp) protein (282aa)
Alpha/beta hydrolase superfamily protein n=3 Tax=Lactobacillus rhamnosus RepID=C7TH95_LACRL
alpha/beta hydrolase superfamily protein
Alpha/beta hydrolase {ECO:0000313|EMBL:KIC97444.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L1_007_029G1_scaffold_174_24
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27248..28009)
DNA (762bp) protein (254aa)
Conserved protein n=3 Tax=Lactobacillus rhamnosus RepID=C7TAJ7_LACRG
hypothetical protein
Membrane protein {ECO:0000313|EMBL:KIC97443.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L1_007_029G1_scaffold_174_25
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28344..29168
DNA (825bp) protein (275aa)
Aldo/keto reductase related enzyme n=6 Tax=Lactobacillus rhamnosus RepID=B5QMK9_LACRH
dkgA; aldo/keto reductase
2,5-diketo-D-gluconic acid reductase {ECO:0000313|EMBL:KIC97442.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L1_007_029G1_scaffold_174_26
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

29343..29813
DNA (471bp) protein (157aa)
Putative ribonucleotide reductase n=1 Tax=Lactobacillus rhamnosus (strain ATCC 53103 / GG) RepID=C8US94_LACRG
nrdI Flavodoxin like family protein
Ribonucleotide reduction protein NrdI {ECO:0000313|EMBL:EKS54166.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L1_007_029G1_scaffold_174_27
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(29829..30761)
DNA (933bp) protein (311aa)
Hydrolase of the alpha/beta superfamily n=2 Tax=Lactobacillus rhamnosus RepID=S5A3I1_LACRH
hydrolase of the alpha/beta superfamily
Hydrolase of the alpha/beta superfamily {ECO:0000313|EMBL:AGP73415.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L1_007_029G1_scaffold_174_28
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

30883..31341
DNA (459bp) protein (153aa)
Transcriptional regulator n=8 Tax=Lactobacillus rhamnosus RepID=B5QMK6_LACRH
transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EKS54164.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
Displaying 28 items

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