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L1_007_029G1_scaffold_176

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_029G1_scaffold_176_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(3..116)
DNA (114bp) protein (38aa)
RNA-binding S1 domain-containing protein {ECO:0000313|EMBL:KFI69847.1}; EC=1.17.1.2 {ECO:0000313|EMBL:KFI69847.1};; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
30S ribosomal protein S1 n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MWF0_BIFBI
30S ribosomal protein S1
L1_007_029G1_scaffold_176_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(236..1111)
DNA (876bp) protein (292aa)
Bifunctional protein FolD n=18 Tax=Bifidobacterium RepID=FOLD_BIFLO
methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L1_007_029G1_scaffold_176_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1215..2411
DNA (1197bp) protein (399aa)
Solute-binding protein of ABC transporter system for metals n=1 Tax=Bifidobacterium longum E18 RepID=V6XVF8_BIFLN
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KHD96091.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
ABC transporter substrate-binding protein
L1_007_029G1_scaffold_176_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2584..3474
DNA (891bp) protein (297aa)
ABC-type Mn2+/Zn2+ transport systems ATPase component n=14 Tax=Bifidobacterium RepID=B3DSS5_BIFLD
ABC transporter ATP-binding protein
ABC-type Mn2+/Zn2+ transport systems ATPase component {ECO:0000313|EMBL:ACD98194.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_007_029G1_scaffold_176_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3541..4374
DNA (834bp) protein (278aa)
ABC-type Mn2+/Zn2+ transport systems permease component n=14 Tax=Bifidobacterium RepID=B3DSS6_BIFLD
ABC transporter permease
ABC 3 transport family protein {ECO:0000313|EMBL:EEI81015.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L1_007_029G1_scaffold_176_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4426..4950)
DNA (525bp) protein (175aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=3 Tax=Bifidobacterium RepID=C2GU89_BIFLN
L1_007_029G1_scaffold_176_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5059..5652)
DNA (594bp) protein (198aa)
Transcriptional_regulator n=10 Tax=Bifidobacterium longum RepID=B3DSS8_BIFLD
transcriptional regulator
CarD-like protein {ECO:0000313|EMBL:EIJ23904.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L1_007_029G1_scaffold_176_8
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5830..8082
DNA (2253bp) protein (751aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
1,4-alpha-glucan branching enzyme GlgB n=3 Tax=Bifidobacterium RepID=E8MHN7_BIFL2
glycosyl hydrolase
L1_007_029G1_scaffold_176_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8118..8840
DNA (723bp) protein (241aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=19 Tax=Bifidobacterium RepID=D6D978_BIFLN
two-component response regulator
Chemotaxis protein CheY {ECO:0000313|EMBL:AIW43581.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L1_007_029G1_scaffold_176_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8840..9913
DNA (1074bp) protein (358aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
Histidine kinase sensor of two-component system n=17 Tax=Bifidobacterium RepID=Q8G5K8_BIFLO
two-component sensor kinase
L1_007_029G1_scaffold_176_11
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9981..10367
DNA (387bp) protein (129aa)
Peptidase S24-like protein n=2 Tax=Bifidobacterium RepID=I3ARS7_BIFLN
Peptidase S24-like protein {ECO:0000313|EMBL:CCY95608.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
lexA2; lexa2
L1_007_029G1_scaffold_176_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10283..10516)
DNA (234bp) protein (78aa)
Phosphoribosyl transferase domain protein n=2 Tax=Bifidobacterium longum RepID=I3AXK5_BIFLN
Phosphoribosyl transferase domain protein {ECO:0000313|EMBL:EIJ23848.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
hypothetical protein
L1_007_029G1_scaffold_176_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11015..11821)
DNA (807bp) protein (269aa)
Phosphomannomutase {ECO:0000313|EMBL:ESV33223.1}; EC=5.4.2.2 {ECO:0000313|EMBL:ESV33223.1};; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
HAD-superfamily hydrolase, subfamily IIB n=7 Tax=Bifidobacterium RepID=D6D981_BIFLN
hypothetical protein
L1_007_029G1_scaffold_176_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11910..12338
DNA (429bp) protein (143aa)
Uncharacterized protein n=18 Tax=Bifidobacterium RepID=Q8G5K4_BIFLO
peptidase
Uncharacterized protein {ECO:0000313|EMBL:KFI69834.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
L1_007_029G1_scaffold_176_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12441..13982)
DNA (1542bp) protein (514aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5EA00_BIFLI
Uncharacterized protein {ECO:0000313|EMBL:KFI69833.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
hypothetical protein
L1_007_029G1_scaffold_176_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13979..17074)
DNA (3096bp) protein (1032aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZTG8_BIFLJ
Glycosyltransferase {ECO:0000313|EMBL:KFI69832.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
hypothetical protein
L1_007_029G1_scaffold_176_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17120..17419)
DNA (300bp) protein (100aa)
Transcriptional regulator WhiB n=3 Tax=Bifidobacterium longum RepID=D6ZTG7_BIFLJ
transcription factor WhiB
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
L1_007_029G1_scaffold_176_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17670..19103
DNA (1434bp) protein (478aa)
Cell envelope-like function transcriptional attenuator common domain protein n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5E9Z7_BIFLI
Transcriptional regulator {ECO:0000313|EMBL:KFI69830.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
hypothetical protein
L1_007_029G1_scaffold_176_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19273..21099
DNA (1827bp) protein (609aa)
FtsK2 n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4QZF7_BIFLM
Cell division protein FtsK {ECO:0000313|EMBL:KHD96075.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
ftsK2; ftsk2
L1_007_029G1_scaffold_176_20
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21213..21491
DNA (279bp) protein (93aa)
Transcriptional regulator WhiB1 n=23 Tax=Bifidobacterium RepID=WHIB1_BIFLO
transcription factor WhiB
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
L1_007_029G1_scaffold_176_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21564..23051)
DNA (1488bp) protein (496aa)
Histidine kinase-like protein n=17 Tax=Bifidobacterium RepID=Q8G5J8_BIFLO
two-component sensor kinase
Histidine kinase {ECO:0000313|EMBL:KHD96073.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
L1_007_029G1_scaffold_176_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23214..23987)
DNA (774bp) protein (258aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MSM1_BIFL1
Uncharacterized protein {ECO:0000313|EMBL:KEY21893.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
hypothetical protein
L1_007_029G1_scaffold_176_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24145..25056
DNA (912bp) protein (304aa)
Predicted membrane protein, hemolysin III homolog n=12 Tax=Bifidobacterium RepID=D6D989_BIFLN
hypothetical protein
Hemolysin III {ECO:0000313|EMBL:AIW43570.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L1_007_029G1_scaffold_176_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25111..25590)
DNA (480bp) protein (160aa)
Transcription elongation factor GreA n=18 Tax=Bifidobacterium RepID=B3DSU5_BIFLD
transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00003926}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_007_029G1_scaffold_176_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25689..26096)
DNA (408bp) protein (136aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
Peptidyl-prolyl cis-trans isomerase n=16 Tax=Bifidobacterium RepID=B3DSU6_BIFLD
peptidyl-prolyl isomerase
L1_007_029G1_scaffold_176_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26238..27698)
DNA (1461bp) protein (487aa)
L-serine dehydratase n=9 Tax=Bifidobacterium longum RepID=Q8G5J3_BIFLO
L-serine dehydratase
L-serine deaminase {ECO:0000313|EMBL:ACD98216.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_007_029G1_scaffold_176_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27845..28414)
DNA (570bp) protein (190aa)
Uncharacterized protein n=14 Tax=Bifidobacterium longum RepID=B3DSU8_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIJ23877.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L1_007_029G1_scaffold_176_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28845..29846)
DNA (1002bp) protein (334aa)
Exopolyphosphatase n=6 Tax=Bifidobacterium longum RepID=B3DSU9_BIFLD
exopolyphosphatase
Ppx/GppA phosphatase family protein {ECO:0000313|EMBL:EIJ23895.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L1_007_029G1_scaffold_176_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29909..30475)
DNA (567bp) protein (189aa)
Uncharacterized protein n=8 Tax=Bifidobacterium longum RepID=B3DSV0_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD98219.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_007_029G1_scaffold_176_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30472..31065)
DNA (594bp) protein (198aa)
Septum formation initiator n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3ARL4_BIFLN
septum formation initiator
Septum formation initiator {ECO:0000313|EMBL:KHD96066.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
Displaying items 1-30 of 31 in total

View Taxonomy