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L1_007_029G1_scaffold_223

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_029G1_scaffold_223_1
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(60..617)
DNA (558bp) protein (186aa)
tyrS; tyrosine--tRNA ligase (EC:6.1.1.1)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
Tyrosine--tRNA ligase n=4 Tax=Bifidobacterium breve RepID=F6CA98_BIFBA
L1_007_029G1_scaffold_223_2
unknown

Not on your lists

619..1248
DNA (630bp) protein (210aa)

This feature has no annotations

L1_007_029G1_scaffold_223_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1344..2111)
DNA (768bp) protein (256aa)
Predicted membrane protein n=11 Tax=Bifidobacterium longum RepID=D6D9C0_BIFLN
hypothetical protein
Membrane protein {ECO:0000313|EMBL:KEY32585.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L1_007_029G1_scaffold_223_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2108..2641)
DNA (534bp) protein (178aa)
Uncharacterized protein n=13 Tax=Bifidobacterium RepID=Q8G5F9_BIFLO
hypothetical protein
HD domain protein {ECO:0000313|EMBL:EEI81073.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L1_007_029G1_scaffold_223_5
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2803..3159)
DNA (357bp) protein (119aa)
Uncharacterized protein n=14 Tax=Bifidobacterium RepID=Q8G5F8_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCY96057.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_007_029G1_scaffold_223_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3216..4025)
DNA (810bp) protein (270aa)
Dinucleotide-utilizing enzyme n=16 Tax=Bifidobacterium RepID=B3DSY3_BIFLD
thiamine biosynthesis protein
Adenylyltransferase {ECO:0000313|EMBL:KEY21854.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L1_007_029G1_scaffold_223_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4102..4971)
DNA (870bp) protein (290aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
Thiazole synthase n=18 Tax=Bifidobacterium RepID=B3DSY4_BIFLD
thiazole synthase
L1_007_029G1_scaffold_223_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4983..5177)
DNA (195bp) protein (65aa)
Sulfur transfer protein for thiamine biosynthesis n=20 Tax=Bifidobacterium RepID=B3DSY5_BIFLD
hypothetical protein
Thiamine biosynthesis protein ThiS {ECO:0000313|EMBL:ACJ52947.1}; TaxID=391904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088; / JCM 1222 / NCTC 11817 / S12).;"
L1_007_029G1_scaffold_223_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5526..6998)
DNA (1473bp) protein (491aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
Argininosuccinate lyase n=15 Tax=Bifidobacterium RepID=ARLY_BIFLD
argininosuccinate lyase
L1_007_029G1_scaffold_223_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7174..8412)
DNA (1239bp) protein (413aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
Argininosuccinate synthase n=11 Tax=Bifidobacterium RepID=ASSY_BIFLD
argG; argg
L1_007_029G1_scaffold_223_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8495..9007)
DNA (513bp) protein (171aa)
Arginine repressor n=5 Tax=Bifidobacterium longum RepID=E8MSH5_BIFL1
arginine repressor
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
L1_007_029G1_scaffold_223_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9004..9969)
DNA (966bp) protein (322aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
Ornithine carbamoyltransferase n=6 Tax=Bifidobacterium longum RepID=E8MSH4_BIFL1
ornithine carbamoyltransferase
L1_007_029G1_scaffold_223_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10013..11308)
DNA (1296bp) protein (432aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
Acetylornithine aminotransferase n=12 Tax=Bifidobacterium RepID=ARGD_BIFLO
acetylornithine aminotransferase
L1_007_029G1_scaffold_223_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11298..12215)
DNA (918bp) protein (306aa)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245383};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
Acetylglutamate kinase n=4 Tax=Bifidobacterium longum RepID=E8MSH2_BIFL1
acetylglutamate kinase
L1_007_029G1_scaffold_223_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12326..13501)
DNA (1176bp) protein (392aa)
Arginine biosynthesis bifunctional protein ArgJ n=8 Tax=Bifidobacterium RepID=E8MHH6_BIFL2
ornithine acetyltransferase/N-acetylglutamate synthase protein
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L1_007_029G1_scaffold_223_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13498..14592)
DNA (1095bp) protein (365aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
N-acetyl-gamma-glutamyl-phosphate reductase n=10 Tax=Bifidobacterium RepID=ARGC_BIFLD
N-acetyl-gamma-glutamyl-phosphate reductase
L1_007_029G1_scaffold_223_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14691..15377)
DNA (687bp) protein (229aa)
Uncharacterized protein n=6 Tax=Bifidobacterium longum RepID=I3ARL8_BIFLN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ66227.1}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
L1_007_029G1_scaffold_223_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(15408..18017)
DNA (2610bp) protein (870aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
Phenylalanine--tRNA ligase beta subunit n=9 Tax=Bifidobacterium RepID=SYFB_BIFLO
pheT; phenylalanyl-tRNA synthetase subunit beta
L1_007_029G1_scaffold_223_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(18025..19080)
DNA (1056bp) protein (352aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
Phenylalanine--tRNA ligase alpha subunit n=15 Tax=Bifidobacterium RepID=SYFA_BIFLO
pheS; phes
L1_007_029G1_scaffold_223_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19146..20024)
DNA (879bp) protein (293aa)
RNA methyltransferase, TrmH family n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3ARQ2_BIFLN
RNA methyltransferase, TrmH family {ECO:0000313|EMBL:EIJ26564.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
spoU2; spou2
L1_007_029G1_scaffold_223_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20220..21047)
DNA (828bp) protein (276aa)
ABC-type cobalt transport system permease component n=8 Tax=Bifidobacterium RepID=B3DSZ8_BIFLD
cbiQ2; cbiq2
Cobalt ABC transporter permease {ECO:0000313|EMBL:AIW43522.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L1_007_029G1_scaffold_223_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21044..22519)
DNA (1476bp) protein (492aa)
ABC-type cobalt transport systems ATPase component n=1 Tax=Bifidobacterium longum (strain DJO10A) RepID=B3DSZ9_BIFLD
cbiO3; cobalt ABC transporter ATPase
ABC-type cobalt transport systems ATPase component {ECO:0000313|EMBL:ACD98268.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_007_029G1_scaffold_223_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22519..23118)
DNA (600bp) protein (200aa)
Hypothetical membrane protein n=1 Tax=Bifidobacterium longum (strain DJO10A) RepID=B3DT00_BIFLD
hypothetical protein
Hypothetical membrane protein {ECO:0000313|EMBL:ACD98269.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_007_029G1_scaffold_223_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23418..24785)
DNA (1368bp) protein (456aa)
Peptidase M20 {ECO:0000313|EMBL:KFI67686.1}; EC=3.4.13.18 {ECO:0000313|EMBL:KFI67686.1};; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Peptidase M20 n=4 Tax=Bifidobacterium longum RepID=F8ARS9_BIFLN
peptidase M20
L1_007_029G1_scaffold_223_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24875..25498
DNA (624bp) protein (208aa)
PF11241 family protein n=4 Tax=Bifidobacterium longum RepID=I3ATI5_BIFLN
hypothetical protein
Membrane protein {ECO:0000313|EMBL:KEY32563.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L1_007_029G1_scaffold_223_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25646..27136
DNA (1491bp) protein (497aa)
Dihydrolipoamide dehydrogenase n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MSG0_BIFL1
dihydrolipoamide dehydrogenase
Dihydrolipoamide dehydrogenase {ECO:0000313|EMBL:BAJ70704.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L1_007_029G1_scaffold_223_27
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27220..28002
DNA (783bp) protein (261aa)
Uncharacterized protein n=11 Tax=Bifidobacterium RepID=B3DT04_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCY96080.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_007_029G1_scaffold_223_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28322..29353
DNA (1032bp) protein (344aa)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
Glutamine synthetase n=3 Tax=Bifidobacterium longum subsp. longum RepID=E4QZM5_BIFLM
glnA2; glna2
L1_007_029G1_scaffold_223_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29625..30146)
DNA (522bp) protein (174aa)
Truncated beta-glucuronidase n=2 Tax=Bifidobacterium longum RepID=E8MHF1_BIFL2
truncated beta-glucuronidase
Truncated beta-glucuronidase {ECO:0000313|EMBL:BAJ66204.1}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
L1_007_029G1_scaffold_223_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30233..31321)
DNA (1089bp) protein (363aa)
Hypothetical permease n=1 Tax=Bifidobacterium longum (strain DJO10A) RepID=B3DT07_BIFLD
permease
Hypothetical permease {ECO:0000313|EMBL:ACD98276.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
Displaying items 1-30 of 33 in total

View Taxonomy