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L1_007_061G1_scaffold_107

Search features with annotation key words

Displaying items 1-30 of 106 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_061G1_scaffold_107_1
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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340..819
DNA (480bp) protein (160aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000255|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000255|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000255|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000255|HAMAP-Rule:MF_00658}; TaxID=508767 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Alaska E43 / Type E3).;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=RLMH_CLOBA
rRNA large subunit methyltransferase
L1_007_061G1_scaffold_107_2
Desulfotomaculum ruminis, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1160..1414
DNA (255bp) protein (85aa)
Major facilitator superfamily MFS_1 n=1 Tax=Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) RepID=F6DT29_DESRL
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEG61134.1}; TaxID=696281 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 /; DL).;"
L1_007_061G1_scaffold_107_3
unknown

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1454..1735
DNA (282bp) protein (94aa)

This feature has no annotations

L1_007_061G1_scaffold_107_4
unknown

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1843..1971
DNA (129bp) protein (43aa)

This feature has no annotations

L1_007_061G1_scaffold_107_5
Clostridium carboxidivorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2122..2544
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q2X4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EET84154.1}; TaxID=536227 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium carboxidivorans P7.;"
hypothetical protein
L1_007_061G1_scaffold_107_6
unknown

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comp(2710..2835)
DNA (126bp) protein (42aa)

This feature has no annotations

L1_007_061G1_scaffold_107_7
unknown

Not on your lists

2949..3119
DNA (171bp) protein (57aa)

This feature has no annotations

L1_007_061G1_scaffold_107_8
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3381..3533
DNA (153bp) protein (51aa)
Uncharacterized protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9C9X3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOR26164.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
hypothetical protein
L1_007_061G1_scaffold_107_9
Fusobacterium mortiferum, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

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4230..5048
DNA (819bp) protein (273aa)
ABC transporter, substrate-binding protein, family 3 n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WGA4_FUSMR
ABC transporter, substrate-binding protein, family 3 {ECO:0000313|EMBL:EEO36910.2}; TaxID=469616 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium mortiferum ATCC 9817.;"
extracellular solute-binding protein
L1_007_061G1_scaffold_107_10
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5114..5890
DNA (777bp) protein (259aa)
Polar amino acid ABC transporter inner membrane subunit n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9BWM9_9CLOT
Polar amino acid ABC transporter inner membrane subunit {ECO:0000313|EMBL:EOR21135.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
polar amino acid ABC transporter inner membrane subunit
L1_007_061G1_scaffold_107_11
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5903..6640
DNA (738bp) protein (246aa)
ABC transporter n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9BVG4_9CLOT
ABC transporter {ECO:0000313|EMBL:EOR21134.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
glnQ; glutamine ABC transporter ATP-binding protein GlnQ
L1_007_061G1_scaffold_107_12
Firmicutes bacterium M10-2, Firmicutes, Bacteria

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6953..8314
DNA (1362bp) protein (454aa)
UPI0002E0D887 related cluster n=1 Tax=unknown RepID=UPI0002E0D887
MATE efflux family protein {ECO:0000313|EMBL:EOS59816.1}; TaxID=1235796 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium M10-2.;"
Na+-driven multidrug efflux pump
L1_007_061G1_scaffold_107_13
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8464..8946
DNA (483bp) protein (161aa)
Putative uncharacterized protein n=2 Tax=Clostridium botulinum E RepID=B2V1E6_CLOBA
Uncharacterized protein {ECO:0000313|EMBL:AIY81530.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
hypothetical protein
L1_007_061G1_scaffold_107_14
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9146..9772)
DNA (627bp) protein (209aa)
Heme oxygenase n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QBW7_9CLOT
Heme oxygenase {ECO:0000313|EMBL:EKY25459.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
heme oxygenase
L1_007_061G1_scaffold_107_15
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10009..10755
DNA (747bp) protein (249aa)
Putative yoxB n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W2W8_CLOBI
putative yoxB
Putative yoxB {ECO:0000313|EMBL:AIY84496.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L1_007_061G1_scaffold_107_16
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10776..11099
DNA (324bp) protein (108aa)
Thioredoxin domain protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MV58_CLOSA
thioredoxin domain protein
Thioredoxin domain protein {ECO:0000313|EMBL:AGX43526.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L1_007_061G1_scaffold_107_17
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

11222..11791
DNA (570bp) protein (190aa)
chromate transporter n=1 Tax=[Clostridium] glycolicum RepID=UPI000362C59D
Uncharacterized protein {ECO:0000313|EMBL:CDB98963.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
chromate transporter
L1_007_061G1_scaffold_107_18
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11797..12375
DNA (579bp) protein (193aa)
chromate transporter n=1 Tax=[Clostridium] glycolicum RepID=UPI00037FD416
Uncharacterized protein {ECO:0000313|EMBL:EHI61411.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
chromate transporter
L1_007_061G1_scaffold_107_19
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12535..13422)
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI000370DAE8
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABX42271.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L1_007_061G1_scaffold_107_20
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13654..14235
DNA (582bp) protein (194aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UVV4_CLOBO
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EES49047.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
RNA polymerase ECF-type sigma factor
L1_007_061G1_scaffold_107_21
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14226..15029
DNA (804bp) protein (268aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum B RepID=B2TRB5_CLOBB
Uncharacterized protein {ECO:0000313|EMBL:AIY81040.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
hypothetical protein
L1_007_061G1_scaffold_107_22
Clostridium carboxidivorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15142..15543)
DNA (402bp) protein (134aa)
Pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PP18_9CLOT
Pyridoxamine 5'-phosphate oxidase-related FMN-binding {ECO:0000313|EMBL:EET89096.1}; TaxID=536227 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium carboxidivorans P7.;"
hypothetical protein
L1_007_061G1_scaffold_107_23
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15864..16184
DNA (321bp) protein (107aa)
Putative HTH-type transcriptional regulator YdeP n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MHQ4_9CLOT
ydeP; putative HTH-type transcriptional regulator YdeP
Putative HTH-type transcriptional regulator YdeP {ECO:0000313|EMBL:AGF55838.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L1_007_061G1_scaffold_107_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16324..17067
DNA (744bp) protein (248aa)
Transcriptional regulator, RpiR family n=2 Tax=Clostridium butyricum RepID=B1QZ16_CLOBU
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:EEP52859.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
RpiR family transcriptional regulator
L1_007_061G1_scaffold_107_25
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17258..18529
DNA (1272bp) protein (424aa)
PTS system, cellobiose-specific IIC component n=2 Tax=Clostridium butyricum RepID=B1QY52_CLOBU
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
PTS system cellobiose-specific transporter subunit IIC
L1_007_061G1_scaffold_107_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18572..19465
DNA (894bp) protein (298aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=B1QY53_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:EEP52365.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
hypothetical protein
L1_007_061G1_scaffold_107_27
Acetobacterium woodii, Acetobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19662..20282)
DNA (621bp) protein (207aa)
Putative methyltransferase n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LHF0_ACEWD
putative methyltransferase
Putative methyltransferase {ECO:0000313|EMBL:AFA49660.1}; TaxID=931626 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Acetobacterium.;" source="Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC; 1655).;"
L1_007_061G1_scaffold_107_28
Acetobacterium woodii, Acetobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20370..20933)
DNA (564bp) protein (188aa)
Transcriptional regulator TetR family n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LHF1_ACEWD
transcriptional regulator TetR family
Transcriptional regulator TetR family {ECO:0000313|EMBL:AFA49661.1}; TaxID=931626 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Acetobacterium.;" source="Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC; 1655).;"
L1_007_061G1_scaffold_107_29
unknown

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comp(21359..21562)
DNA (204bp) protein (68aa)

This feature has no annotations

L1_007_061G1_scaffold_107_30
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21654..22817)
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EQR0_CLOPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ENZ36264.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
Displaying items 1-30 of 106 in total

View Taxonomy