ggKbase home page

L1_007_061G1_scaffold_150

Search features with annotation key words

Displaying items 1-30 of 100 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_061G1_scaffold_150_1
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

123..1034
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2BDJ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI69918.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
hypothetical protein
L1_007_061G1_scaffold_150_2
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1039..1860
DNA (822bp) protein (274aa)
Uncharacterized protein n=2 Tax=Clostridium bolteae RepID=R0BNF2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ49474.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
macro domain protein
L1_007_061G1_scaffold_150_3
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1884..2009
DNA (126bp) protein (42aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A6LVP5_CLOB8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETD68621.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
L1_007_061G1_scaffold_150_4
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2044..2751
DNA (708bp) protein (236aa)
Putative cell wall binding repeat-containing protein n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LXU5_CLOB8
cell wall binding repeat-containing protein
Putative cell wall binding repeat-containing protein {ECO:0000313|EMBL:ABR35175.1}; Flags: Precursor;; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L1_007_061G1_scaffold_150_5
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2963..3121
DNA (159bp) protein (53aa)
NacetylmuramoylLalanine amidase {ECO:0000313|EMBL:KJZ82725.1}; EC=3.5.1.28 {ECO:0000313|EMBL:KJZ82725.1};; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
Cell wall hydrolase/autolysin n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LTJ0_CLOB8
cell wall hydrolase/autolysin
L1_007_061G1_scaffold_150_6
unknown

Not on your lists

3172..3405
DNA (234bp) protein (78aa)

This feature has no annotations

L1_007_061G1_scaffold_150_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3564..3803
DNA (240bp) protein (80aa)
UPI0003D5E42C related cluster n=1 Tax=unknown RepID=UPI0003D5E42C
Uncharacterized protein {ECO:0000313|EMBL:ETI87967.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
L1_007_061G1_scaffold_150_8
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3842..4087
DNA (246bp) protein (82aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=B1QZH2_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:EEP54956.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
hypothetical protein
L1_007_061G1_scaffold_150_9
unknown

Not on your lists

4087..4194
DNA (108bp) protein (36aa)

This feature has no annotations

L1_007_061G1_scaffold_150_10
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4666..5157
DNA (492bp) protein (164aa)
Transcriptional regulator, CarD family n=1 Tax=Clostridium botulinum (strain Eklund 17B / Type B) RepID=B2TL80_CLOBB
CarD family transcriptional regulator
Transcriptional regulator, CarD family {ECO:0000313|EMBL:ACD25012.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L1_007_061G1_scaffold_150_11
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5275..5412)
DNA (138bp) protein (46aa)
Uncharacterized protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7M3K4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHJ00321.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
hypothetical protein
L1_007_061G1_scaffold_150_12
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5913..6566)
DNA (654bp) protein (218aa)
ctfB1; butyrate--acetoacetate CoA-transferase subunit B (EC:2.8.3.9)
Butyrate--acetoacetate CoA-transferase subunit B {ECO:0000313|EMBL:AGF55867.1}; EC=2.8.3.9 {ECO:0000313|EMBL:AGF55867.1};; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
Butyrate--acetoacetate CoA-transferase subunit B n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MWM4_9CLOT
L1_007_061G1_scaffold_150_13
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6579..7073)
DNA (495bp) protein (165aa)
CoA-transferase subunit A (EC:2.8.3.-)
3-oxoadipate CoA-transferase subunit A n=1 Tax=Clostridium botulinum RepID=UPI000368DF17
Branched-chain amino acid dehydrogenase {ECO:0000313|EMBL:KIL07326.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L1_007_061G1_scaffold_150_14
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7100..7330)
DNA (231bp) protein (77aa)
Butyrate-acetoacetate CoA-transferase subunit A {ECO:0000313|EMBL:CDH89620.1}; EC=2.8.3.8 {ECO:0000313|EMBL:CDH89620.1};; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
CoA-transferase, A subunit (EC:2.8.3.-)
CoA-transferase subunit A n=1 Tax=Clostridium botulinum CFSAN002369 RepID=S8B2E8_CLOBO
L1_007_061G1_scaffold_150_15
Eubacterium acidaminophilum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7570..8001
DNA (432bp) protein (144aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=R9MZP4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHM57279.1}; TaxID=1286171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium acidaminophilum DSM 3953.;"
L1_007_061G1_scaffold_150_16
unknown

Not on your lists

8142..8249
DNA (108bp) protein (36aa)
hypothetical protein
L1_007_061G1_scaffold_150_17
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8284..9549
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9N0U4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS76668.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
DNA-directed DNA polymerase
L1_007_061G1_scaffold_150_18
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9559..10236
DNA (678bp) protein (226aa)
DNA polymerase {ECO:0000256|RuleBase:RU004460}; EC=2.7.7.7 {ECO:0000256|RuleBase:RU004460};; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /; 743B).;"
XRE family transcriptional regulator n=1 Tax=Oceanobacillus sp. Ndiop RepID=UPI0002895B0B
DNA-directed DNA polymerase
L1_007_061G1_scaffold_150_19
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10302..11117
DNA (816bp) protein (272aa)
Virulence-associated E family protein n=1 Tax=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) RepID=D9SSD5_CLOC7
virulence-associated E family protein
Virulence-associated E family protein {ECO:0000313|EMBL:ADL50532.1}; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /; 743B).;"
L1_007_061G1_scaffold_150_20
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11370..11669
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QJA3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKY28094.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
hypothetical protein
L1_007_061G1_scaffold_150_21
unknown

Not on your lists

comp(11738..11857)
DNA (120bp) protein (40aa)

This feature has no annotations

L1_007_061G1_scaffold_150_22
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(11862..12572)
DNA (711bp) protein (237aa)
glycerol transporter n=1 Tax=[Clostridium] glycolicum RepID=UPI00037C6699
MIP family channel protein {ECO:0000313|EMBL:EEC90945.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
glycerol transporter
L1_007_061G1_scaffold_150_23
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12588..13082)
DNA (495bp) protein (165aa)
lactate racemization operon protein n=1 Tax=Lactobacillus plantarum RepID=UPI000398C4CA
Uncharacterized protein {ECO:0000313|EMBL:EPC76507.1}; TaxID=1256208 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp41.;"
hypothetical protein
L1_007_061G1_scaffold_150_24
Lactobacillus plantarum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13025..13804)
DNA (780bp) protein (260aa)
Lactate racemization operon protein LarC,N-terminal domain n=1 Tax=Lactobacillus paracasei subsp. paracasei Lpp41 RepID=S2RYE9_LACPA
lactate racemization operon protein LarC,N-terminal domain protein
UPF0272 protein LBP_cg0089 {ECO:0000256|HAMAP-Rule:MF_01074}; TaxID=767468 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus plantarum subsp. plantarum P-8.;"
L1_007_061G1_scaffold_150_25
Pediococcus pentosaceus, Pediococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13814..14482)
DNA (669bp) protein (223aa)
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate carboxylase n=1 Tax=Sporolactobacillus inulinus RepID=UPI000255C08D
NCAIR mutase (PurE)-related protein
NCAIR mutase (PurE)-related protein {ECO:0000313|EMBL:ABJ68714.1}; TaxID=278197 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Pediococcus.;" source="Pediococcus pentosaceus (strain ATCC 25745 / 183-1w).;"
L1_007_061G1_scaffold_150_26
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14475..15305)
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Clostridium intestinale URNW RepID=U2NJM1_9CLOT
PP-loop domain-containing protein
PP-loop domain-containing protein {ECO:0000313|EMBL:AKA67364.1}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
L1_007_061G1_scaffold_150_27
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(15307..16590)
DNA (1284bp) protein (428aa)
lactate racemization operon protein LarA n=1 Tax=[Clostridium] glycolicum RepID=UPI0003663DE6
Uncharacterized protein {ECO:0000313|EMBL:EEC90946.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
larA; lactate racemization operon protein LarA
L1_007_061G1_scaffold_150_28
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

16763..17416
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI000381CB45
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:EEC89489.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Crp/Fnr family transcriptional regulator
L1_007_061G1_scaffold_150_29
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17510..18514
DNA (1005bp) protein (335aa)
ABC-type Co2+ transport system, permease component n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6UBM6_9CLOT
ABC-type Co2+ transport system, permease component {ECO:0000313|EMBL:EKQ57324.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
cobalt transport protein CbiM
L1_007_061G1_scaffold_150_30
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18507..19304
DNA (798bp) protein (266aa)
Predicted permease n=2 Tax=Clostridium kluyveri RepID=A5N064_CLOK5
cobalt transport protein
Cobalt transport protein {ECO:0000313|EMBL:AKA72178.1}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
Displaying items 1-30 of 100 in total

View Taxonomy