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L1_007_061G1_scaffold_187

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_061G1_scaffold_187_1
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(106..2265)
DNA (2160bp) protein (720aa)
Lacto-N-biose phosphorylase {ECO:0000313|EMBL:KJZ88009.1}; EC=2.4.1.211 {ECO:0000313|EMBL:KJZ88009.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
Uncharacterized protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JGU8_CLOBU
hypothetical protein
L1_007_061G1_scaffold_187_2
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2277..3164)
DNA (888bp) protein (296aa)
Permease protein n=4 Tax=Clostridium butyricum RepID=B1QXT9_CLOBU
ABC-type sugar transport system, permease component {ECO:0000313|EMBL:KJZ88020.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
binding-protein-dependent transport system inner membrane protein
L1_007_061G1_scaffold_187_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3177..3956)
DNA (780bp) protein (260aa)
ABC transporter, permease protein n=4 Tax=Clostridium butyricum RepID=B1QXT8_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30313.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
L1_007_061G1_scaffold_187_4
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4260..5123
DNA (864bp) protein (288aa)
Transcriptional regulator, AraC family n=4 Tax=Clostridium butyricum RepID=B1QXT7_CLOBU
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEP55259.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
AraC family transcriptional regulator
L1_007_061G1_scaffold_187_5
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5186..6793)
DNA (1608bp) protein (536aa)
FAD-dependent dehydrogenase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5ML99_CLOSA
FAD-dependent dehydrogenase
FAD-dependent dehydrogenase {ECO:0000313|EMBL:AGX41308.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L1_007_061G1_scaffold_187_6
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6912..8129)
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MNP0_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX41306.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L1_007_061G1_scaffold_187_7
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8102..8953)
DNA (852bp) protein (284aa)
TIGR00159 family protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6T023_9CLOT
TIGR00159 family protein {ECO:0000313|EMBL:EKQ52183.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
TIGR00159 family protein
L1_007_061G1_scaffold_187_8
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9127..10110
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MKG5_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX41304.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L1_007_061G1_scaffold_187_9
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10172..10747
DNA (576bp) protein (192aa)
cell wall hydrolase (EC:3.5.1.28)
Cell wall hydrolase {ECO:0000313|EMBL:AGX41303.1}; EC=3.5.1.28 {ECO:0000313|EMBL:AGX41303.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Cell wall hydrolase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5ML95_CLOSA
L1_007_061G1_scaffold_187_10
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10839..12011)
DNA (1173bp) protein (391aa)
iadA; isoaspartyl dipeptidase IadA (EC:3.4.19.-)
Isoaspartyl dipeptidase {ECO:0000256|PIRNR:PIRNR001238}; EC=3.4.19.- {ECO:0000256|PIRNR:PIRNR001238};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Isoaspartyl dipeptidase IadA n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MPC8_CLOSA
L1_007_061G1_scaffold_187_11
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12114..13433)
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TKM4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ52180.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
DNA uptake lipoprotein
L1_007_061G1_scaffold_187_12
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13551..15170)
DNA (1620bp) protein (540aa)
ptsI; phosphoenolpyruvate-protein phosphotransferase PtsI (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Phosphoenolpyruvate-protein phosphotransferase PtsI n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5ML17_CLOSA
L1_007_061G1_scaffold_187_13
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15430..16467)
DNA (1038bp) protein (346aa)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
nrdB; ribonucleoside-diphosphate reductase subunit beta (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase subunit beta n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6T021_9CLOT
L1_007_061G1_scaffold_187_14
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16573..18804)
DNA (2232bp) protein (744aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
nrdA; ribonucleoside-diphosphate reductase subunit alpha (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase subunit alpha n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5ML89_CLOSA
L1_007_061G1_scaffold_187_15
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18991..20337)
DNA (1347bp) protein (449aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
walK; sensor protein kinase WalK (EC:2.7.13.3)
Histidine kinase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TX58_9CLOT
L1_007_061G1_scaffold_187_16
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20309..21001)
DNA (693bp) protein (231aa)
Regulatory protein VanR n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MNN0_CLOSA
vanR1; regulatory protein VanR
Regulatory protein VanR {ECO:0000313|EMBL:AGX41296.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L1_007_061G1_scaffold_187_17
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21045..21773)
DNA (729bp) protein (243aa)
Tetratricopeptide repeat protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U8P6_9CLOT
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EKQ52174.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
tetratricopeptide TPR_1 repeat-containing protein
L1_007_061G1_scaffold_187_18
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22110..22970
DNA (861bp) protein (287aa)
UPF0750 membrane protein YpjC n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MKF5_CLOSA
ypjC; UPF0750 membrane protein YpjC
UPF0750 membrane protein YpjC {ECO:0000313|EMBL:AGX41294.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L1_007_061G1_scaffold_187_19
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23080..23637)
DNA (558bp) protein (186aa)
fumB; fumarate hydratase class I, anaerobic (EC:4.2.1.2)
Fumarate hydratase class I, anaerobic {ECO:0000313|EMBL:AGX41293.1}; EC=4.2.1.2 {ECO:0000313|EMBL:AGX41293.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Fumarate hydratase class I, anaerobic n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5ML85_CLOSA
L1_007_061G1_scaffold_187_20
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23649..24491)
DNA (843bp) protein (281aa)
fumA; fumarate hydratase alpha subunit FumA (EC:4.2.1.2)
Fumarate hydratase alpha subunit FumA {ECO:0000313|EMBL:AGF54044.1}; EC=4.2.1.2 {ECO:0000313|EMBL:AGF54044.1};; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
Fumarate hydratase alpha subunit FumA n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1M7V5_9CLOT
L1_007_061G1_scaffold_187_21
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24694..24855
DNA (162bp) protein (54aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TX53_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ52171.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
L1_007_061G1_scaffold_187_22
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24920..25579)
DNA (660bp) protein (220aa)
N-acetylmuramoyl-L-alanine amidase CwlD n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TKK7_9CLOT
N-acetylmuramoyl-L-alanine amidase CwlD {ECO:0000313|EMBL:EKQ52170.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
N-acetylmuramoyl-L-alanine amidase CwlD
L1_007_061G1_scaffold_187_23
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25747..27363)
DNA (1617bp) protein (539aa)
UPI0003D596EA related cluster n=1 Tax=unknown RepID=UPI0003D596EA
Na/Pi-cotransporter family protein/PhoU family protein {ECO:0000313|EMBL:ETI91713.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
Na/Pi-cotransporter family protein/PhoU family protein
L1_007_061G1_scaffold_187_24
unknown

Not on your lists

comp(27582..27959)
DNA (378bp) protein (126aa)

This feature has no annotations

L1_007_061G1_scaffold_187_25
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(28213..28605)
DNA (393bp) protein (131aa)
30S ribosomal protein S9 n=1 Tax=Clostridium colicanis 209318 RepID=N9XXW5_9CLOT
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
rpsI; 30S ribosomal protein S9
L1_007_061G1_scaffold_187_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(28631..29065)
DNA (435bp) protein (145aa)
50S ribosomal protein L13 n=3 Tax=Clostridium butyricum RepID=C4IF20_CLOBU
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
rplM; 50S ribosomal protein L13
L1_007_061G1_scaffold_187_27
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29223..29957)
DNA (735bp) protein (245aa)
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
tRNA pseudouridine synthase A n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5ML79_CLOSA
L1_007_061G1_scaffold_187_28
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30092..30907)
DNA (816bp) protein (272aa)
Energy-coupling factor transporter transmembrane protein EcfT n=2 Tax=Clostridium botulinum E RepID=B2UYE3_CLOBA
cobalt ABC transporter permease
Energy-coupling factor transporter transmembrane protein EcfT {ECO:0000256|HAMAP-Rule:MF_01461}; Short=ECF transporter T component EcfT {ECO:0000256|HAMAP-Rule:MF_01461};; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L1_007_061G1_scaffold_187_29
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30911..31783)
DNA (873bp) protein (291aa)
ecfA2; energy-coupling factor transporter ATP-binding protein EcfA2 (EC:3.6.3.-)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Energy-coupling factor transporter ATP-binding protein EcfA2 n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MNM0_CLOSA
L1_007_061G1_scaffold_187_30
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31768..32619)
DNA (852bp) protein (284aa)
ecfA1; energy-coupling factor transporter ATP-binding protein EcfA1 (EC:3.6.3.-)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Energy-coupling factor transporter ATP-binding protein EcfA1 n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5ML01_CLOSA
Displaying items 1-30 of 62 in total

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