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L1_007_061G1_scaffold_388

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_061G1_scaffold_388_1
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(106..2106)
DNA (2001bp) protein (667aa)
Small GTP-binding protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MKK1_9CLOT
small GTP-binding protein
Small GTP-binding protein {ECO:0000313|EMBL:AGF56798.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L1_007_061G1_scaffold_388_2
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2565..3938)
DNA (1374bp) protein (458aa)
Methyl-accepting chemotaxis protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6T036_9CLOT
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EKQ52208.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
methyl-accepting chemotaxis protein
L1_007_061G1_scaffold_388_3
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4214..5641)
DNA (1428bp) protein (476aa)
Cell volume regulation protein A n=2 Tax=Clostridium botulinum B RepID=B2TIS9_CLOBB
potassium/proton antiporter
Cell volume regulation protein A {ECO:0000313|EMBL:ACD23364.1}; Na+/H+ exchanger {ECO:0000313|EMBL:CDH89303.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L1_007_061G1_scaffold_388_4
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6038..6973)
DNA (936bp) protein (312aa)
rnz; ribonuclease Z (EC:3.1.26.11)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_01818}; tRNase Z {ECO:0000256|HAMAP-Rule:MF_01818}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Ribonuclease Z n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSY0_CLOSA
L1_007_061G1_scaffold_388_5
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6990..7778)
DNA (789bp) protein (263aa)
UPF0246 protein CLO_1449 n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5USK2_CLOBO
UPF0246 protein CLO_1449 {ECO:0000256|HAMAP-Rule:MF_00652}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
hypothetical protein
L1_007_061G1_scaffold_388_6
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7955..8110
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSC3_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX42546.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L1_007_061G1_scaffold_388_7
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8406..8639)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MPN9_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX42545.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L1_007_061G1_scaffold_388_8
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8799..9314)
DNA (516bp) protein (172aa)
Isochorismatase hydrolase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MP32_CLOSA
isochorismatase hydrolase
Isochorismatase hydrolase {ECO:0000313|EMBL:AGX42544.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L1_007_061G1_scaffold_388_9
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9406..9975)
DNA (570bp) protein (190aa)
TQXA domain-containing protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0A8F0_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ88644.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
TQXA domain-containing protein
L1_007_061G1_scaffold_388_10
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10058..10813)
DNA (756bp) protein (252aa)
exoA; exodeoxyribonuclease ExoA (EC:3.1.11.2)
Exodeoxyribonuclease ExoA {ECO:0000313|EMBL:AGF57977.1}; EC=3.1.11.2 {ECO:0000313|EMBL:AGF57977.1};; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
Exodeoxyribonuclease ExoA n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1N3E1_9CLOT
L1_007_061G1_scaffold_388_11
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11040..11981)
DNA (942bp) protein (314aa)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
2-dehydropantoate 2-reductase (EC:1.1.1.169)
2-dehydropantoate 2-reductase n=2 Tax=Clostridium RepID=N9Z7C0_9CLOT
L1_007_061G1_scaffold_388_12
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12229..13317)
DNA (1089bp) protein (363aa)
Proteasome-activating nucleotidase Pan n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSB9_CLOSA
pan; proteasome-activating nucleotidase Pan
Proteasome-activating nucleotidase Pan {ECO:0000313|EMBL:AGX42541.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L1_007_061G1_scaffold_388_13
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13890..15914)
DNA (2025bp) protein (675aa)
UPI0003D62FE1 related cluster n=1 Tax=unknown RepID=UPI0003D62FE1
UPF0313 protein Q607_CBUC00053G0045 {ECO:0000256|HAMAP-Rule:MF_01251}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
ygiQ1; radical SAM protein YgiQ
L1_007_061G1_scaffold_388_14
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16092..16232)
DNA (141bp) protein (47aa)
Uncharacterized protein n=1 Tax=Clostridium intestinale URNW RepID=U2N4H7_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM68945.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
L1_007_061G1_scaffold_388_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16287..18143)
DNA (1857bp) protein (619aa)
lipid A export ATP-binding/permease protein MsbA (EC:3.6.3.-)
Multidrug ABC transporter ATP-binding protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ATY8_CLOBU
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:ENZ36184.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
L1_007_061G1_scaffold_388_16
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18136..20388)
DNA (2253bp) protein (751aa)
UPI0003D59B12 related cluster n=1 Tax=unknown RepID=UPI0003D59B12
ABC transporter, ATP-binding/permease protein {ECO:0000313|EMBL:ETI90732.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
ABC transporter ATP-binding/permease
L1_007_061G1_scaffold_388_17
Sporolactobacillus laevolacticus, Sporolactobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20631..21170)
DNA (540bp) protein (180aa)
Adenine phosphoribosyltransferase {ECO:0000313|EMBL:EST10733.1}; EC=2.4.2.7 {ECO:0000313|EMBL:EST10733.1};; TaxID=1395513 species="Bacteria; Firmicutes; Bacilli; Bacillales; Sporolactobacillaceae; Sporolactobacillus.;" source="Sporolactobacillus laevolacticus DSM 442.;"
adenine phosphoribosyltransferase n=1 Tax=Bacillus acidiproducens RepID=UPI00036AFB25
adenine phosphoribosyltransferase
L1_007_061G1_scaffold_388_18
Brevibacillus laterosporus, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21194..22120)
DNA (927bp) protein (309aa)
rihC; Non-specific ribonucleoside hydrolase RihC (EC:3.2.-.-)
ribonucleoside hydrolase n=1 Tax=Paenibacillus sp. OSY-SE RepID=UPI0002FBD7F8
Ribonucleoside hydrolase {ECO:0000313|EMBL:AKF93832.1}; TaxID=1465 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus laterosporus (Bacillus laterosporus).;"
L1_007_061G1_scaffold_388_19
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22260..23366)
DNA (1107bp) protein (369aa)
Lipoprotein, bmp family n=2 Tax=Clostridium botulinum B RepID=B2TPK3_CLOBB
membrane lipoprotein tmpc
Lipoprotein, bmp family {ECO:0000313|EMBL:ACD22899.1}; Putative lipoprotein {ECO:0000313|EMBL:CDH91880.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L1_007_061G1_scaffold_388_20
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23965..25320)
DNA (1356bp) protein (452aa)
UPF0210 protein Cbei_2352 n=2 Tax=Clostridium RepID=Y2352_CLOB8
hypothetical protein
UPF0210 protein X276_21310 {ECO:0000256|HAMAP-Rule:MF_01221}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
L1_007_061G1_scaffold_388_21
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25334..25603)
DNA (270bp) protein (90aa)
UPF0237 protein Cbei_2351 n=2 Tax=Clostridium RepID=A6LVY1_CLOB8
hypothetical protein
UPF0237 protein X276_21315 {ECO:0000256|HAMAP-Rule:MF_01054}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
L1_007_061G1_scaffold_388_22
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25830..26159
DNA (330bp) protein (110aa)
BdrR n=2 Tax=Clostridium butyricum RepID=M8K517_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ84906.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
L1_007_061G1_scaffold_388_23
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(26212..27267)
DNA (1056bp) protein (352aa)
Basic membrane lipoprotein n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LSP0_9SPIR
Basic membrane lipoprotein {ECO:0000313|EMBL:CCY76101.1}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
basic membrane lipoprotein
L1_007_061G1_scaffold_388_24
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27289..29265)
DNA (1977bp) protein (659aa)
Putative sensory transducer protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MVW3_CLOSA
putative sensory transducer protein
Putative sensory transducer protein {ECO:0000313|EMBL:AGX44745.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L1_007_061G1_scaffold_388_25
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29447..29614)
DNA (168bp) protein (56aa)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
tkt2; transketolase Tkt (EC:2.2.1.1)
Transketolase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TVK1_9CLOT
Displaying 25 items

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