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L1_007_061G1_scaffold_429

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_061G1_scaffold_429_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..700
DNA (699bp) protein (233aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1457183 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis EK3.;"
Phosphate import ATP-binding protein PstB n=8 Tax=Bifidobacterium RepID=PSTB_BIFLO
phosphate ABC transporter ATPase subunit
L1_007_061G1_scaffold_429_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

997..1575
DNA (579bp) protein (193aa)
Uncharacterized protein n=9 Tax=Bifidobacterium RepID=B3DTP5_BIFLD
hypothetical protein
Membrane protein {ECO:0000313|EMBL:KEY31713.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L1_007_061G1_scaffold_429_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1639..3897
DNA (2259bp) protein (753aa)
Hypothetical Membrane protein n=2 Tax=Bifidobacterium RepID=E4R0B9_BIFLM
Membrane protein {ECO:0000313|EMBL:KEY23455.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
hypothetical protein
L1_007_061G1_scaffold_429_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3963..4826
DNA (864bp) protein (288aa)
Tas4 n=13 Tax=Bifidobacterium RepID=E4R0B8_BIFLM
oxidoreductase
Aldo/keto reductase {ECO:0000313|EMBL:KEY23454.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L1_007_061G1_scaffold_429_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4924..5979
DNA (1056bp) protein (352aa)
Inosine-uridine nucleoside hydrolase n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MRP8_BIFL1
inosine-uridine nucleoside hydrolase
Nucleoside hydrolase {ECO:0000313|EMBL:KEY31710.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L1_007_061G1_scaffold_429_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5984..7327)
DNA (1344bp) protein (448aa)
AAA domain protein n=3 Tax=Bifidobacterium longum subsp. longum RepID=I3AZ93_BIFLN
AAA domain protein {ECO:0000313|EMBL:KFI72776.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
protein of unknown function DUF4143
L1_007_061G1_scaffold_429_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7634..8248)
DNA (615bp) protein (205aa)
Ribosome maturation factor RimM n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3B217_BIFLN
16S rRNA-processing protein
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L1_007_061G1_scaffold_429_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8271..8504)
DNA (234bp) protein (78aa)
UPF0109 protein BLD_1053 n=22 Tax=Bifidobacterium RepID=B3DTN0_BIFLD
Predicted RNA-binding protein (contains KH domain)
UPF0109 protein BL0306 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L1_007_061G1_scaffold_429_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(8525..8986)
DNA (462bp) protein (154aa)
30S ribosomal protein S16 n=15 Tax=Bifidobacterium RepID=RS16_BIFLO
rpsP; rpsp
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L1_007_061G1_scaffold_429_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9219..10328)
DNA (1110bp) protein (370aa)
Endonuclease/Exonuclease/phosphatase n=1 Tax=Bifidobacterium sp. 12_1_47BFAA RepID=E5XWL0_9BIFI
hypothetical protein
Endonuclease/exonuclease/phosphatase family protein {ECO:0000313|EMBL:EIJ32644.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L1_007_061G1_scaffold_429_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(10405..12153)
DNA (1749bp) protein (583aa)
Signal recognition particle protein n=3 Tax=Bifidobacterium longum RepID=Q8G7G3_BIFLO
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
ffh; signal recognition particle protein
L1_007_061G1_scaffold_429_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12362..13270
DNA (909bp) protein (303aa)
Uncharacterized protein n=14 Tax=Bifidobacterium RepID=Q8G7G4_BIFLO
Co/Zn/Cd cation transport protein
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:EEI81764.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L1_007_061G1_scaffold_429_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13289..14938)
DNA (1650bp) protein (550aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
Cysteine--tRNA ligase n=13 Tax=Bifidobacterium RepID=B3DTM5_BIFLD
cysteinyl-tRNA synthetase
L1_007_061G1_scaffold_429_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15037..15885
DNA (849bp) protein (283aa)
Possible amidotransferase n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G7G6_BIFLO
amidotransferase
Possible amidotransferase {ECO:0000313|EMBL:AAN24140.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L1_007_061G1_scaffold_429_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15933..18209
DNA (2277bp) protein (759aa)
ATPase components of ABC transporters with duplicated ATPase domains n=11 Tax=Bifidobacterium RepID=D6DA09_BIFLN
uup2; uup2
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEI81767.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L1_007_061G1_scaffold_429_16
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18262..18681)
DNA (420bp) protein (140aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
Ribonuclease VapC n=18 Tax=Bifidobacterium RepID=B3DTM2_BIFLD
plasmid stabilization protein
L1_007_061G1_scaffold_429_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18691..18969)
DNA (279bp) protein (93aa)
Plasmid stability protein n=17 Tax=Bifidobacterium RepID=B3DTM1_BIFLD
plasmid stabilization protein
Arc-like DNA binding domain protein {ECO:0000313|EMBL:EIJ21567.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L1_007_061G1_scaffold_429_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19125..19679)
DNA (555bp) protein (185aa)
Acetolactate synthase small subunit n=17 Tax=Bifidobacterium RepID=B3DTM0_BIFLD
acetolactate synthase small subunit
Acetolactate synthase small subunit {ECO:0000313|EMBL:AAN24137.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L1_007_061G1_scaffold_429_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19696..21663)
DNA (1968bp) protein (656aa)
Acetolactate synthase {ECO:0000313|EMBL:AIW43335.1}; EC=2.2.1.6 {ECO:0000313|EMBL:AIW43335.1};; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
IlvB n=12 Tax=Bifidobacterium RepID=E4R0A4_BIFLM
ilvB; ilvb
L1_007_061G1_scaffold_429_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21824..22552)
DNA (729bp) protein (243aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
Ribonuclease 3 n=14 Tax=Bifidobacterium RepID=RNC_BIFLO
ribonuclease III
L1_007_061G1_scaffold_429_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(22695..22889)
DNA (195bp) protein (65aa)
50S ribosomal protein L32 n=20 Tax=Bifidobacterium RepID=RL32_BIFLD
50S ribosomal protein L32
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
L1_007_061G1_scaffold_429_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22978..23607)
DNA (630bp) protein (210aa)
Putative metal-binding/nucleic acid-binding protein n=3 Tax=Bifidobacterium RepID=E4R0A1_BIFLM
metal-binding/nucleic acid-binding protein
Putative metal-binding/nucleic acid-binding protein {ECO:0000313|EMBL:BAP82996.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
L1_007_061G1_scaffold_429_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23696..24586)
DNA (891bp) protein (297aa)
Uncharacterized protein n=13 Tax=Bifidobacterium RepID=B3DTL5_BIFLD
hypothetical protein
Cell division protein {ECO:0000313|EMBL:AIW43339.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L1_007_061G1_scaffold_429_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24594..25094)
DNA (501bp) protein (167aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
Phosphopantetheine adenylyltransferase n=18 Tax=Bifidobacterium RepID=COAD_BIFLD
phosphopantetheine adenylyltransferase
L1_007_061G1_scaffold_429_25
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25368..25661
DNA (294bp) protein (98aa)
Uncharacterized protein n=16 Tax=Bifidobacterium RepID=B3DTL3_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFV37983.1}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
L1_007_061G1_scaffold_429_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25703..26614)
DNA (912bp) protein (304aa)
Tas3 n=6 Tax=Bifidobacterium RepID=E4R097_BIFLM
tas3; tas3
L-glyceraldehyde 3-phosphate reductase {ECO:0000313|EMBL:KEY31690.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L1_007_061G1_scaffold_429_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26852..27280
DNA (429bp) protein (143aa)
Transcriptional regulator n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MRR9_BIFL1
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:BAJ70463.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L1_007_061G1_scaffold_429_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27380..28006)
DNA (627bp) protein (209aa)
Uncharacterized protein n=7 Tax=Bifidobacterium longum RepID=B3DTL0_BIFLD
hypothetical protein
Membrane protein {ECO:0000313|EMBL:KEY31688.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L1_007_061G1_scaffold_429_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28237..29559
DNA (1323bp) protein (441aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
Nicotinate phosphoribosyltransferase n=12 Tax=Bifidobacterium RepID=Q8G7H9_BIFLO
pncB; pncb
L1_007_061G1_scaffold_429_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29842..30618
DNA (777bp) protein (259aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
Ribonuclease PH n=1 Tax=Bifidobacterium longum (strain DJO10A) RepID=B3DTK8_BIFLD
rph; rph
Displaying items 1-30 of 36 in total

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