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L1_007_061G1_scaffold_442

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_061G1_scaffold_442_1
Gordonibacter pamelaeae, Gordonibacter, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(1..81)
DNA (81bp) protein (27aa)
Elongation factor Tu n=3 Tax=Bacteroides RepID=B3JHF5_9BACE
hypothetical protein
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=657308 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Gordonibacter.;" source="Gordonibacter pamelaeae 7-10-1-b.;"
L1_007_061G1_scaffold_442_2
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(291..911)
DNA (621bp) protein (207aa)
RNA polymerase sigma-H factor SigH n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MP66_CLOSA
sigH; RNA polymerase sigma-H factor SigH
RNA polymerase sigma-H factor SigH {ECO:0000313|EMBL:AGX41237.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L1_007_061G1_scaffold_442_3
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(994..1506)
DNA (513bp) protein (171aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A6LPP4_CLOB8
hypothetical protein
Putative RNA-binding protein {ECO:0000313|EMBL:AJG96848.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
L1_007_061G1_scaffold_442_4
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1520..2359)
DNA (840bp) protein (280aa)
RNA methyltransferase, TrmH family, group 3 n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LPP3_CLOB8
RNA methyltransferase
RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:ABR32323.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L1_007_061G1_scaffold_442_5
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2391..2804)
DNA (414bp) protein (138aa)
mrnC; mini-ribonuclease 3 (EC:3.1.26.-)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Mini-ribonuclease 3 n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MK95_CLOSA
L1_007_061G1_scaffold_442_6
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2967..4367)
DNA (1401bp) protein (467aa)
cysS; cysteine--tRNA ligase CysS (EC:6.1.1.16)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Cysteine--tRNA ligase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5ML24_CLOSA
L1_007_061G1_scaffold_442_7
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4385..6175)
DNA (1791bp) protein (597aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
proS; proline--tRNA ligase ProS (EC:6.1.1.15)
Proline--tRNA ligase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TKH3_9CLOT
L1_007_061G1_scaffold_442_8
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6738..7412)
DNA (675bp) protein (225aa)
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IspD (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MNG4_CLOSA
L1_007_061G1_scaffold_442_9
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7428..8546)
DNA (1119bp) protein (373aa)
PilT/Pin/TRAM domain-containing protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MC12_9CLOT
PilT/Pin/TRAM domain-containing protein
PilT/Pin/TRAM domain-containing protein {ECO:0000313|EMBL:AGF53983.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L1_007_061G1_scaffold_442_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8850..9242
DNA (393bp) protein (131aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=B1R1P4_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30457.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
L1_007_061G1_scaffold_442_11
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9290..10354)
DNA (1065bp) protein (355aa)
DNA integrity scanning protein DisA n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5ML20_CLOSA
disA; DNA integrity scanning protein DisA
DNA integrity scanning protein DisA {ECO:0000256|HAMAP-Rule:MF_01438, ECO:0000256|SAAS:SAAS00010389}; Cyclic di-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01438}; Diadenylate cyclase {ECO:0000256|HAMAP-Rule:MF_01438, ECO:0000256|SAAS:SAAS00207481}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L1_007_061G1_scaffold_442_12
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10497..11867)
DNA (1371bp) protein (457aa)
DNA repair protein radA n=4 Tax=Clostridium butyricum RepID=B1R1P6_CLOBU
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
radA; DNA repair protein RadA
L1_007_061G1_scaffold_442_13
unknown

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12050..12217
DNA (168bp) protein (56aa)

This feature has no annotations

L1_007_061G1_scaffold_442_14
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12326..12559
DNA (234bp) protein (78aa)
Glutaredoxin-like protein, YruB-family n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MNF9_CLOSA
glutaredoxin-like protein, YruB-family
Glutaredoxin-like protein, YruB-family {ECO:0000313|EMBL:AGX41226.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L1_007_061G1_scaffold_442_15
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12622..12849)
DNA (228bp) protein (76aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum B RepID=B2TIE7_CLOBB
hypothetical protein
Glutaredoxin family protein {ECO:0000313|EMBL:AIY82088.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
L1_007_061G1_scaffold_442_16
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12853..13788)
DNA (936bp) protein (312aa)
34.2 kDa protein in rubredoxin operon (EC:1.8.1.-)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
34.2 kDa protein in rubredoxin operon n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MKT5_CLOSA
L1_007_061G1_scaffold_442_17
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13973..16402)
DNA (2430bp) protein (810aa)
Chaperone protein ClpB n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MK82_CLOSA
clpB1; chaperone protein ClpB
Chaperone protein ClpB {ECO:0000313|EMBL:AGX41224.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L1_007_061G1_scaffold_442_18
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16430..17446)
DNA (1017bp) protein (339aa)
putative ATP:guanido phosphotransferase (EC:2.7.3.-)
Protein-arginine kinase {ECO:0000256|HAMAP-Rule:MF_00602, ECO:0000256|SAAS:SAAS00166216}; EC=2.7.14.1 {ECO:0000256|HAMAP-Rule:MF_00602, ECO:0000256|SAAS:SAAS00166206};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Putative ATP:guanido phosphotransferase CLSA_c01700 n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5ML16_CLOSA
L1_007_061G1_scaffold_442_19
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17427..17999)
DNA (573bp) protein (191aa)
UvrB/UvrC protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7LYW9_9CLOT
UvrB/UvrC protein {ECO:0000313|EMBL:EHI97098.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
UvrB/UvrC protein
L1_007_061G1_scaffold_442_20
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18015..18470)
DNA (456bp) protein (152aa)
Transcriptional repressor, CtsR n=1 Tax=Clostridium sp. DL-VIII RepID=G7LYW8_9CLOT
Transcriptional repressor, CtsR {ECO:0000313|EMBL:EHI97097.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
transcriptional repressor, CtsR
L1_007_061G1_scaffold_442_21
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18664..19311
DNA (648bp) protein (216aa)
Zn-dependent hydrolase of the metallo-beta-lactamase superfamily n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MG77_9CLOT
Zn-dependent hydrolase of the metallo-beta-lactamase superfamily
Zn-dependent hydrolase of the metallo-beta-lactamase superfamily {ECO:0000313|EMBL:AGF53976.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L1_007_061G1_scaffold_442_22
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19474..19644)
DNA (171bp) protein (57aa)
Ferredoxin n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MK77_CLOSA
ferredoxin
Ferredoxin {ECO:0000313|EMBL:AGX41219.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L1_007_061G1_scaffold_442_23
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19756..19959)
DNA (204bp) protein (68aa)
Copper chaperone n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1M7N2_9CLOT
copper chaperone
Copper chaperone {ECO:0000313|EMBL:AGF53974.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L1_007_061G1_scaffold_442_24
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19971..20876)
DNA (906bp) protein (302aa)
PSP1 domain protein n=4 Tax=Clostridium butyricum RepID=B1R1Q8_CLOBU
Signal peptidase-like protein {ECO:0000313|EMBL:KJZ85621.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
yaaT; stage 0 sporulation protein YaaT
L1_007_061G1_scaffold_442_25
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20880..21812)
DNA (933bp) protein (311aa)
DNA polymerase III, gamma/tau subunit n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MNE9_CLOSA
DNA polymerase III, gamma/tau subunit
DNA polymerase III, gamma/tau subunit {ECO:0000313|EMBL:AGX41216.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L1_007_061G1_scaffold_442_26
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21831..22163)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U8M5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ52109.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
L1_007_061G1_scaffold_442_27
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22224..22874)
DNA (651bp) protein (217aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
tmk; thymidylate kinase Tmk (EC:2.7.4.9)
Thymidylate kinase n=1 Tax=Clostridium sp. DL-VIII RepID=G7LYW0_9CLOT
L1_007_061G1_scaffold_442_28
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22883..23071)
DNA (189bp) protein (63aa)
Inhibitor of sigma-G Gin n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1M7M8_9CLOT
inhibitor of sigma-G Gin
Inhibitor of sigma-G Gin {ECO:0000313|EMBL:AGF53969.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L1_007_061G1_scaffold_442_29
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23340..24497
DNA (1158bp) protein (386aa)
abgB1; p-aminobenzoyl-glutamate hydrolase subunit B (EC:3.5.1.-)
p-aminobenzoyl-glutamate hydrolase subunit B {ECO:0000313|EMBL:AGX41212.1}; EC=3.5.1.- {ECO:0000313|EMBL:AGX41212.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
p-aminobenzoyl-glutamate hydrolase subunit B n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MP47_CLOSA
L1_007_061G1_scaffold_442_30
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24630..25574
DNA (945bp) protein (315aa)
Mg2+/Co2+ transporter n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TKF9_9CLOT
Mg2+/Co2+ transporter {ECO:0000313|EMBL:EKQ52105.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
magnesium and cobalt transporter
Displaying 30 items

View Taxonomy