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L1_007_061G1_scaffold_460

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_061G1_scaffold_460_1
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2..484
DNA (483bp) protein (161aa)
acnA; aconitate hydratase (EC:4.2.1.3)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
Aconitate hydratase n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GQF2_BIFLS
L1_007_061G1_scaffold_460_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

629..1021
DNA (393bp) protein (131aa)
Addiction module antitoxin, RelB/DinJ family n=5 Tax=Bifidobacterium longum subsp. longum RepID=I3B0R3_BIFLN
hypothetical protein
Damage-inducible protein J {ECO:0000313|EMBL:KEY25554.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L1_007_061G1_scaffold_460_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1018..1509
DNA (492bp) protein (164aa)
Toxin-antitoxin system, toxin component, PIN family n=7 Tax=Bifidobacterium RepID=C5EC26_BIFLI
hypothetical protein
PIN domain protein {ECO:0000313|EMBL:EIJ30743.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L1_007_061G1_scaffold_460_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1571..3718)
DNA (2148bp) protein (716aa)
PF03235 family protein n=3 Tax=Bifidobacterium longum RepID=I3B9K1_BIFLN
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ71382.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
hypothetical protein
L1_007_061G1_scaffold_460_5
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3766..4407)
DNA (642bp) protein (214aa)
Uncharacterized protein n=14 Tax=Bifidobacterium RepID=Q8G4I1_BIFLO
argA; arga
Uncharacterized protein {ECO:0000313|EMBL:CCY95378.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_007_061G1_scaffold_460_6
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4447..5265)
DNA (819bp) protein (273aa)
Response regulator receiver domain protein n=3 Tax=Bifidobacterium RepID=C2GYG6_BIFLN
Transcriptional regulator {ECO:0000313|EMBL:CCY95379.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
two-component response regulator
L1_007_061G1_scaffold_460_7
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5207..6439)
DNA (1233bp) protein (411aa)
Atypical histidine kinase sensor of two-component system n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G4H9_BIFLO
two-component sensor kinase
Atypical histidine kinase sensor of two-component system protein {ECO:0000313|EMBL:CCY95380.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_007_061G1_scaffold_460_8
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6906..7625
DNA (720bp) protein (240aa)
Integral Membrane protein n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5ND36_9BIFI
Integral Membrane protein {ECO:0000313|EMBL:CCY95381.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
integral membrane protein
L1_007_061G1_scaffold_460_9
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7806..8705
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5NDY0_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CCY95382.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
hypothetical protein
L1_007_061G1_scaffold_460_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8845..9861
DNA (1017bp) protein (339aa)
EamA-like transporter family protein n=1 Tax=Bifidobacterium longum subsp. longum 44B RepID=I3BHD6_BIFLN
EamA-like transporter family protein {ECO:0000313|EMBL:EIJ30779.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
hypothetical protein
L1_007_061G1_scaffold_460_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9894..10736)
DNA (843bp) protein (281aa)
Uncharacterized protein n=3 Tax=Bifidobacterium longum RepID=Q8G4H5_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAN25206.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L1_007_061G1_scaffold_460_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10766..12220
DNA (1455bp) protein (485aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=10 Tax=Bifidobacterium RepID=MIAB_BIFLD
miaB; miab
L1_007_061G1_scaffold_460_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12231..13217
DNA (987bp) protein (329aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
tRNA dimethylallyltransferase n=13 Tax=Bifidobacterium RepID=MIAA_BIFLD
tRNA delta(2)-isopentenylpyrophosphate transferase
L1_007_061G1_scaffold_460_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13251..14000)
DNA (750bp) protein (250aa)
Cell filamentation protein fic n=1 Tax=Bifidobacterium longum E18 RepID=V6XZ22_BIFLN
Cell division protein Fic {ECO:0000313|EMBL:KEY31413.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
fic; fic
L1_007_061G1_scaffold_460_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14212..17121
DNA (2910bp) protein (970aa)
DNA translocase FtsK n=9 Tax=Bifidobacterium longum RepID=FTSK_BIFLO
Cell division protein FtsK {ECO:0000313|EMBL:ESV33745.1}; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
cell division protein FtsK
L1_007_061G1_scaffold_460_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17298..17933
DNA (636bp) protein (212aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=12 Tax=Bifidobacterium RepID=Q8G4H2_BIFLO
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
Phosphatidylglycerophosphate synthase {ECO:0000313|EMBL:ACD97726.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_007_061G1_scaffold_460_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17945..18478
DNA (534bp) protein (178aa)
Competence/damage-inducible protein cinA n=6 Tax=Bifidobacterium RepID=D6DCY6_BIFLN
competence-damage inducible protein
Competence/damage-inducible protein cinA {ECO:0000313|EMBL:CBK70357.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L1_007_061G1_scaffold_460_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18538..19053
DNA (516bp) protein (172aa)
Possible DNA binding protein n=15 Tax=Bifidobacterium RepID=Q8G4H0_BIFLO
Helix-turn-helix.
XRE family transcriptional regulator {ECO:0000313|EMBL:KEY31409.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L1_007_061G1_scaffold_460_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19165..19398
DNA (234bp) protein (78aa)
Uncharacterized protein n=14 Tax=Bifidobacterium RepID=B7GQG7_BIFLS
Protein of unknown function (DUF3046).
Uncharacterized protein {ECO:0000313|EMBL:CBK70359.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L1_007_061G1_scaffold_460_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


19699..20892
DNA (1194bp) protein (398aa)
Protein RecA n=13 Tax=Bifidobacterium RepID=RECA_BIFLO
recA; recombinase A
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L1_007_061G1_scaffold_460_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21063..21488
DNA (426bp) protein (142aa)
Regulatory protein RecX n=2 Tax=Bifidobacterium longum subsp. longum RepID=C2GYI1_BIFLN
Regulatory protein RecX {ECO:0000313|EMBL:EEI79806.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
oraA; hypothetical protein
L1_007_061G1_scaffold_460_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21668..22234
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G4G7_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAN25216.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L1_007_061G1_scaffold_460_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22365..23027
DNA (663bp) protein (221aa)
Ribosome-associated protein Y n=7 Tax=Bifidobacterium longum RepID=E4R2E5_BIFLM
hypothetical protein
Ribosomal subunit interface protein {ECO:0000313|EMBL:EIJ24968.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L1_007_061G1_scaffold_460_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23189..25084
DNA (1896bp) protein (632aa)
Protein translocase subunit SecA n=6 Tax=Bifidobacterium RepID=D6ZUS7_BIFLJ
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
secA; seca
Displaying 24 items

View Taxonomy