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L1_007_061G1_scaffold_626

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_061G1_scaffold_626_1
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(282..1553)
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U6A1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ57361.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
L1_007_061G1_scaffold_626_2
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1852..2991)
DNA (1140bp) protein (380aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=C9L9F2_BLAHA
Putative membrane protein {ECO:0000313|EMBL:CDC10834.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
Predicted permease
L1_007_061G1_scaffold_626_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3296..4546)
DNA (1251bp) protein (417aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
UPI0003D61084 related cluster n=1 Tax=unknown RepID=UPI0003D61084
phosphoribosylamine--glycine ligase
L1_007_061G1_scaffold_626_4
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4643..6148)
DNA (1506bp) protein (502aa)
Bifunctional purine biosynthesis protein PurH {ECO:0000255|HAMAP-Rule:MF_00139}; Includes:; Phosphoribosylaminoimidazolecarboxamide formyltransferase {ECO:0000255|HAMAP-Rule:MF_00139}; EC=2.1.2.3 {ECO:0000255|HAMAP-Rule:MF_00139};; AICAR transformylase {ECO:0000255|HAMAP-Rule:MF_00139}; Includes:; IMP cyclohydrolase {ECO:0000255|HAMAP-Rule:MF_00139}; EC=3.5.4.10 {ECO:0000255|HAMAP-Rule:MF_00139};; ATIC {ECO:0000255|HAMAP-Rule:MF_00139}; IMP synthase {ECO:0000255|HAMAP-Rule:MF_00139}; Inosinicase {ECO:0000255|HAMAP-Rule:MF_00139}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
Bifunctional purine biosynthesis protein PurH n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=PUR9_CLOB8
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
L1_007_061G1_scaffold_626_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6169..6780)
DNA (612bp) protein (204aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
purN; phosphoribosylglycinamide formyltransferase PurN (EC:2.1.2.2)
Phosphoribosylglycinamide formyltransferase n=2 Tax=Clostridium butyricum RepID=B1QYC6_CLOBU
L1_007_061G1_scaffold_626_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6768..7769)
DNA (1002bp) protein (334aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
purM; phosphoribosylformylglycinamidine cyclo-ligase PurM (EC:6.3.3.1)
UPI0003D5982F related cluster n=1 Tax=unknown RepID=UPI0003D5982F
L1_007_061G1_scaffold_626_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7870..9282)
DNA (1413bp) protein (471aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
purF; amidophosphoribosyltransferase (EC:2.4.2.14)
UPI0003A9DE7B related cluster n=1 Tax=unknown RepID=UPI0003A9DE7B
L1_007_061G1_scaffold_626_8
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9382..10089)
DNA (708bp) protein (236aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
purC; phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
UPI0003A0898B related cluster n=1 Tax=unknown RepID=UPI0003A0898B
L1_007_061G1_scaffold_626_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10089..10568)
DNA (480bp) protein (160aa)
purE; N5-carboxyaminoimidazole ribonucleotide mutase PurE (EC:5.4.99.18)
N5-carboxyaminoimidazole ribonucleotide mutase n=4 Tax=Clostridium butyricum RepID=B1QYC2_CLOBU
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000313|EMBL:KHD15614.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
L1_007_061G1_scaffold_626_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10857..14603)
DNA (3747bp) protein (1249aa)
Phosphoribosylformylglycinamidine synthase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8KD21_CLOBU
Phosphoribosylformylglycinamidine synthase {ECO:0000313|EMBL:ETI87429.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
phosphoribosylformylglycinamidine synthase
L1_007_061G1_scaffold_626_11
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14843..16114)
DNA (1272bp) protein (424aa)
Voltage gated chloride channel family n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V3B5_CLOBA
voltage gated chloride channel family
Voltage gated chloride channel family protein {ECO:0000313|EMBL:AIY79978.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
L1_007_061G1_scaffold_626_12
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16225..16392)
DNA (168bp) protein (56aa)
Conserved domain protein n=4 Tax=Clostridium butyricum RepID=B1QYB7_CLOBU
Conserved domain protein {ECO:0000313|EMBL:EEP53801.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
zinc-binding domain-containing protein
L1_007_061G1_scaffold_626_13
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16543..17226)
DNA (684bp) protein (228aa)
glnQ2; glutamine transport ATP-binding protein GlnQ (EC:3.6.3.-)
ABC-type polar amino acid transport system, ATPase component n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U1C6_9CLOT
ABC-type polar amino acid transport system, ATPase component {ECO:0000313|EMBL:EKQ53797.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
L1_007_061G1_scaffold_626_14
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17242..17883)
DNA (642bp) protein (214aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Clostridium sp. DL-VIII RepID=G7M1P1_9CLOT
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:EHI98286.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
artQ1; arginine transport system permease protein ArtQ
L1_007_061G1_scaffold_626_15
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17938..18789)
DNA (852bp) protein (284aa)
Cystine-binding periplasmic protein FliY n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MNX2_CLOSA
fliY1; cystine-binding periplasmic protein FliY
Cystine-binding periplasmic protein FliY {ECO:0000313|EMBL:AGX42295.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L1_007_061G1_scaffold_626_16
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19071..20030)
DNA (960bp) protein (320aa)
Protein QmcA n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MP40_CLOSA
qmcA; protein QmcA
Protein QmcA {ECO:0000313|EMBL:AGX42293.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L1_007_061G1_scaffold_626_17
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20043..20465)
DNA (423bp) protein (141aa)
nodulation efficiency protein D n=1 Tax=Clostridium beijerinckii RepID=UPI0002DB590F
Uncharacterized protein {ECO:0000313|EMBL:AJG97716.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
hypothetical protein
L1_007_061G1_scaffold_626_18
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20827..22725
DNA (1899bp) protein (633aa)
nadE; glutamine-dependent NAD(+) synthetase NadE (EC:6.3.5.1)
Glutamine-dependent NAD(+) synthetase NadE {ECO:0000313|EMBL:AGX42291.1}; EC=6.3.5.1 {ECO:0000313|EMBL:AGX42291.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Glutamine-dependent NAD(+) synthetase NadE n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MRJ1_CLOSA
L1_007_061G1_scaffold_626_19
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23037..24065
DNA (1029bp) protein (343aa)
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:KJZ83032.1}; EC=2.6.1.42 {ECO:0000313|EMBL:KJZ83032.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
ilvE; branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain-amino-acid transaminase n=2 Tax=Clostridium butyricum RepID=M8KC85_CLOBU
L1_007_061G1_scaffold_626_20
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24142..25005)
DNA (864bp) protein (288aa)
thioredoxin reductase n=1 Tax=Clostridium botulinum RepID=UPI00037CCFC2
gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
Thioredoxin reductase {ECO:0000313|EMBL:KIL06767.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L1_007_061G1_scaffold_626_21
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25007..25345)
DNA (339bp) protein (113aa)
Thioredoxin n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MP35_CLOSA
thioredoxin
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L1_007_061G1_scaffold_626_22
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25543..27249)
DNA (1707bp) protein (569aa)
Multidrug ABC transporter ATP-binding protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G6K0_CLOPA
ABC transporter
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:ETD71608.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
L1_007_061G1_scaffold_626_23
unknown

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27458..27712
DNA (255bp) protein (85aa)

This feature has no annotations

Displaying 23 items

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