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L1_007_061G1_scaffold_643

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_061G1_scaffold_643_1
unknown

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comp(1..66)
DNA (66bp) protein (22aa)

This feature has no annotations

L1_007_061G1_scaffold_643_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(913..3546)
DNA (2634bp) protein (878aa)
Alpha-mannosidase mngB n=4 Tax=Escherichia coli RepID=L3IG40_ECOLX
Alpha-mannosidase mngB {ECO:0000313|EMBL:EOW10124.1}; TaxID=1182699 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE100.;"
mngB; alpha-mannosidase
L1_007_061G1_scaffold_643_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3564..5480)
DNA (1917bp) protein (639aa)
Heat-responsive suppressor hrsA n=8 Tax=Escherichia coli RepID=K3J0Q0_ECOLX
Heat-responsive suppressor hrsA {ECO:0000313|EMBL:EOV64694.1}; TaxID=1182671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE64.;"
PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC
L1_007_061G1_scaffold_643_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5649..6371
DNA (723bp) protein (241aa)
Mannosyl-D-glycerate transport/metabolism system repressor MngR n=134 Tax=Escherichia RepID=MNGR_ECOLI
GntR family transcriptional regulator
Mannosyl-D-glycerate transport/metabolism system repressor mngR {ECO:0000313|EMBL:KDU32015.1}; TaxID=1444252 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-373-03_S4_C2.;"
L1_007_061G1_scaffold_643_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6475..7344)
DNA (870bp) protein (290aa)
sucD; succinate-CoA ligase, alpha subunit (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=439855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain SMS-3-5 / SECEC).;"
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1324 Tax=Enterobacteriaceae RepID=SUCD_ECO57
L1_007_061G1_scaffold_643_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7344..8510)
DNA (1167bp) protein (389aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; TaxID=1181778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE234.;"
sucC; Succinyl-CoA ligase (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit beta n=16 Tax=Escherichia coli RepID=D7Y3N0_ECOLX
L1_007_061G1_scaffold_643_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8604..9821)
DNA (1218bp) protein (406aa)
sucB; dihydrolipoamide succinyltransferase (EC:2.3.1.61)
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; EC=2.3.1.61;; 2-oxoglutarate dehydrogenase complex component E2 {ECO:0000256|RuleBase:RU361138}; TaxID=1446533 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O111:NM str. K6722.;"
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex n=744 Tax=Enterobacteriaceae RepID=ODO2_ECO57
L1_007_061G1_scaffold_643_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9836..12637)
DNA (2802bp) protein (934aa)
sucA; 2-oxoglutarate dehydrogenase E1 component (EC:1.2.4.2)
2-oxoglutarate dehydrogenase E1 component n=1176 Tax=Enterobacteriaceae RepID=ODO1_ECO57
2-oxoglutarate dehydrogenase E1 component {ECO:0000313|EMBL:EQY33676.1}; TaxID=1281218 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3212-1.;"
L1_007_061G1_scaffold_643_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12938..13654)
DNA (717bp) protein (239aa)
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=1182699 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE100.;"
sdhB; Succinate dehydrogenase iron-sulfur protein (EC:1.3.99.1)
Succinate dehydrogenase iron-sulfur subunit n=17 Tax=Escherichia coli RepID=D7Y3M6_ECOLX
L1_007_061G1_scaffold_643_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13670..15436)
DNA (1767bp) protein (589aa)
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=749537 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 115-1.;"
succinate dehydrogenase, flavoprotein subunit (EC:1.3.99.1)
Succinate dehydrogenase, flavoprotein subunit n=4 Tax=Escherichia coli RepID=D7Y3M5_ECOLX
L1_007_061G1_scaffold_643_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15436..15783)
DNA (348bp) protein (116aa)
Succinate dehydrogenase hydrophobic membrane anchor subunit n=1105 Tax=Enterobacteriaceae RepID=DHSD_ECOL6
sdhD; succinate dehydrogenase cytochrome b556 small subunit
Succinate dehydrogenase hydrophobic membrane anchor subunit {ECO:0000313|EMBL:EOV80348.1}; TaxID=1182677 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE70.;"
L1_007_061G1_scaffold_643_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15777..16181)
DNA (405bp) protein (135aa)
Succinate dehydrogenase cytochrome b556 subunit n=1 Tax=Escherichia coli HVH 79 (4-2512823) RepID=T6JUF6_ECOLX
sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit
Succinate dehydrogenase, cytochrome b556 subunit {ECO:0000313|EMBL:EFK26077.1}; TaxID=749547 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 187-1.;"
L1_007_061G1_scaffold_643_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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16484..16591
DNA (108bp) protein (36aa)
Uncharacterized protein n=1 Tax=Escherichia coli O81 (strain ED1a) RepID=B7MPL4_ECO81
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQN32150.1}; TaxID=1280961 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 6 (3-8296502).;"
L1_007_061G1_scaffold_643_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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16797..18080
DNA (1284bp) protein (428aa)
gltA; citrate synthase (EC:2.3.3.1)
Citrate synthase n=1084 Tax=Enterobacteriaceae RepID=CISY_ECOL6
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=1446560 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O121:H19 str. 2010C-3609.;"
L1_007_061G1_scaffold_643_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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18469..19035
DNA (567bp) protein (189aa)
Fimbrial protein n=329 Tax=Enterobacteriaceae RepID=B1IY10_ECOLC
fimbrial protein
Fimbrial protein {ECO:0000313|EMBL:EFK45604.1}; TaxID=679206 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 119-7.;"
L1_007_061G1_scaffold_643_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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19095..21077
DNA (1983bp) protein (661aa)
Outer membrane protein n=2 Tax=Escherichia coli RepID=S1DFD4_ECOLX
Outer membrane protein {ECO:0000313|EMBL:EOV64681.1}; TaxID=1182671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE64.;"
fimbrial biogenesis outer membrane usher protein
L1_007_061G1_scaffold_643_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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21077..21544
DNA (468bp) protein (156aa)
Type VII secretion system (T7SS), usher family protein n=1 Tax=Escherichia coli 180600 RepID=M9CSG6_ECOLX
fimbrial biogenesis outer membrane usher protein
Strain O157 SvETEC scaffold2.1, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ48005.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
L1_007_061G1_scaffold_643_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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21559..22290
DNA (732bp) protein (244aa)
Periplasmic pilus chaperone family protein n=302 Tax=Enterobacteriaceae RepID=A7ZJ97_ECO24
ybgP; chaperone
Chaperone protein papD {ECO:0000313|EMBL:EHX34874.1}; TaxID=868191 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC12A.;"
L1_007_061G1_scaffold_643_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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22287..23348
DNA (1062bp) protein (354aa)
Uncharacterized protein n=227 Tax=Enterobacteriaceae RepID=J7QD23_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESD28415.1}; TaxID=1268985 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907710.;"
L1_007_061G1_scaffold_643_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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23500..24546
DNA (1047bp) protein (349aa)
Protein AbrB n=316 Tax=Enterobacteriaceae RepID=A7ZXX6_ECOHS
membrane protein AbrB duplication
Membrane AbrB duplication domain protein {ECO:0000313|EMBL:KEO03396.1}; TaxID=1444219 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-392-07_S4_C1.;"
L1_007_061G1_scaffold_643_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(24543..25334)
DNA (792bp) protein (264aa)
Endonuclease 8 n=166 Tax=Escherichia coli RepID=END8_ECO24
endonuclease VIII
Endonuclease 8 {ECO:0000256|HAMAP-Rule:MF_01253}; DNA glycosylase/AP lyase Nei {ECO:0000256|HAMAP-Rule:MF_01253}; DNA-(apurinic or apyrimidinic site) lyase Nei {ECO:0000256|HAMAP-Rule:MF_01253}; Endonuclease VIII {ECO:0000256|HAMAP-Rule:MF_01253}; TaxID=1182701 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE102.;"
L1_007_061G1_scaffold_643_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(25370..26104)
DNA (735bp) protein (245aa)
UPF0271 protein YbgL n=146 Tax=Enterobacteriaceae RepID=YBGL_ECO24
ybgL; lactam utilization protein
UPF0271 protein YbgL {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=749545 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 182-1.;"
L1_007_061G1_scaffold_643_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(26094..27026)
DNA (933bp) protein (311aa)
Allophanate hydrolase, subunit 2 n=163 Tax=Enterobacteriaceae RepID=B2TU95_SHIB3
ybgK; putative hydrolase subunit
Allophanate hydrolase subunit 2 {ECO:0000313|EMBL:EII22126.1}; TaxID=869686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 9.0111.;"
L1_007_061G1_scaffold_643_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(27020..27676)
DNA (657bp) protein (219aa)
Carboxylase n=3 Tax=Escherichia coli RepID=L3IF63_ECOLX
Carboxylase {ECO:0000313|EMBL:ELD72461.1}; TaxID=1181778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE234.;"
carboxylase
L1_007_061G1_scaffold_643_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(27699..28442)
DNA (744bp) protein (248aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=1444181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-222-05_S3_C3.;"
Putative GTP cyclohydrolase 1 type 2 n=1216 Tax=Enterobacteriaceae RepID=GTPC1_ECO57
ybgI; metal-binding protein
L1_007_061G1_scaffold_643_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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28713..30194
DNA (1482bp) protein (494aa)
Dipeptide permease D n=291 Tax=Enterobacteriaceae RepID=DTPD_SHIFL
ybgH; transporter
Dipeptide permease D {ECO:0000256|HAMAP-Rule:MF_01880}; TaxID=1268978 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 113303.;"
L1_007_061G1_scaffold_643_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(30344..31762)
DNA (1419bp) protein (473aa)
Deoxyribodipyrimidine photo-lyase {ECO:0000313|EMBL:KEN51340.1}; EC=4.1.99.3 {ECO:0000313|EMBL:KEN51340.1};; TaxID=1444091 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 6-537-08_S1_C2.;"
Deoxyribodipyrimidine photo-lyase n=15 Tax=Escherichia coli RepID=D7Y3K9_ECOLX
phr; deoxyribodipyrimidine photolyase
L1_007_061G1_scaffold_643_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(31759..32268)
DNA (510bp) protein (170aa)
Uncharacterized protein YbgA n=204 Tax=Enterobacteriaceae RepID=YBGA_ECOLI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFU37591.1}; TaxID=679202 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 85-1.;"
Displaying 28 items

View Taxonomy