ggKbase home page

L1_007_061G1_scaffold_661

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_061G1_scaffold_661_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..1299)
DNA (1299bp) protein (433aa)
GTP pyrophosphokinase {ECO:0000313|EMBL:ESV33719.1}; EC=2.7.6.5 {ECO:0000313|EMBL:ESV33719.1};; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
GTP pyrophosphokinase n=2 Tax=Bifidobacterium longum RepID=V6Y1I7_BIFLN
spoT; spot
L1_007_061G1_scaffold_661_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1433..1909)
DNA (477bp) protein (159aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=15 Tax=Bifidobacterium RepID=DUT_BIFLD
deoxyuridine 5'-triphosphate nucleotidohydrolase
L1_007_061G1_scaffold_661_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1909..2202)
DNA (294bp) protein (98aa)
Uncharacterized protein n=18 Tax=Bifidobacterium RepID=Q8G4E9_BIFLO
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ71345.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L1_007_061G1_scaffold_661_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2361..3452
DNA (1092bp) protein (364aa)
Uncharacterized protein n=13 Tax=Bifidobacterium RepID=B3DRA7_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD97751.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_007_061G1_scaffold_661_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3462..4709)
DNA (1248bp) protein (416aa)
Uncharacterized protein n=3 Tax=Bifidobacterium longum RepID=B3DRA6_BIFLD
hypothetical protein
Nucleotide pyrophosphatase {ECO:0000313|EMBL:KHD94880.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
L1_007_061G1_scaffold_661_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4981..7707
DNA (2727bp) protein (909aa)
DNA topoisomerase (ATP-hydrolyzing) {ECO:0000256|SAAS:SAAS00075954}; EC=5.99.1.3 {ECO:0000256|SAAS:SAAS00075954};; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
DNA topoisomerase IV subunit A (EC:5.99.1.3)
DNA topoisomerase IV subunit A n=1 Tax=Bifidobacterium longum subsp. longum F8 RepID=D6DD05_BIFLN
L1_007_061G1_scaffold_661_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7853..8641
DNA (789bp) protein (263aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUR4_BIFLJ
winged helix family two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADH00620.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L1_007_061G1_scaffold_661_8
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8652..13385)
DNA (4734bp) protein (1578aa)
DEAD/H associated protein n=1 Tax=Bifidobacterium sp. 12_1_47BFAA RepID=E5XXZ9_9BIFI
DEAD/H associated protein {ECO:0000313|EMBL:EFV37511.1}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
ATP-dependent helicase
L1_007_061G1_scaffold_661_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13401..14390)
DNA (990bp) protein (330aa)
Ribokinase n=1 Tax=Bifidobacterium longum subsp. longum KACC 91563 RepID=F8APU5_BIFLN
sugar kinase
Sugar kinase {ECO:0000313|EMBL:AIW43866.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L1_007_061G1_scaffold_661_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14437..15663)
DNA (1227bp) protein (409aa)
Fucose permease n=7 Tax=Bifidobacterium RepID=B3DRA1_BIFLD
fucP3; fucp3
MFS transporter {ECO:0000313|EMBL:AIW43867.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L1_007_061G1_scaffold_661_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15770..18028)
DNA (2259bp) protein (753aa)
DNA gyrase, B subunit, C-terminal domain protein (Fragment) n=1 Tax=Bifidobacterium longum subsp. longum 2-2B RepID=I3AQN7_BIFLN
DNA gyrase, B subunit, C-terminal domain protein {ECO:0000313|EMBL:EIJ29522.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
DNA topoisomerase IV subunit B
L1_007_061G1_scaffold_661_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18086..19510)
DNA (1425bp) protein (475aa)
RNA polymerase sigma factor SigA n=14 Tax=Bifidobacterium RepID=B3DR99_BIFLD
RNA polymerase sigma factor RpoD
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1035817 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum KACC 91563.;"
L1_007_061G1_scaffold_661_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19660..20322)
DNA (663bp) protein (221aa)
Uncharacterized protein n=8 Tax=Bifidobacterium longum RepID=B3DR98_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACJ52058.1}; TaxID=391904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088; / JCM 1222 / NCTC 11817 / S12).;"
L1_007_061G1_scaffold_661_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20529..21611
DNA (1083bp) protein (361aa)
Probably bifunctional short chain isoprenyl diphosphate synthase [includes: farnesyl pyrophosphate synthetase (Fpp synthetase) (Dimethylallyltransferase) geranyltranstransferase ] n=2 Tax=Bifidobacterium longum RepID=Q8G4G0_BIFLO
ispA; ispa
Probably bifunctional short chain isoprenyl diphosphate synthase [includes: farnesyl pyrophosphate synthetase (Fpp synthetase) (Dimethylallyltransferase) geranyltranstransferase ] {ECO:0000313|EMBL:AAN25223.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L1_007_061G1_scaffold_661_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21755..24028
DNA (2274bp) protein (758aa)
Probable serine/threonine-protein kinase pknA2 n=4 Tax=Bifidobacterium longum RepID=PKNA2_BIFLO
serine-threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:ESV33733.1}; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
L1_007_061G1_scaffold_661_16
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24080..24784)
DNA (705bp) protein (235aa)
Putative acyltransferase n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5MUN7_9BIFI
Putative acyltransferase {ECO:0000313|EMBL:CCY95490.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
plsC1; 1-acyl-sn-glycerol-3-phosphate acyltransferase
L1_007_061G1_scaffold_661_17
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24845..25540
DNA (696bp) protein (232aa)
Uncharacterized protein n=6 Tax=Bifidobacterium RepID=B3DR94_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCY95491.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_007_061G1_scaffold_661_18
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25694..25882)
DNA (189bp) protein (63aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=B3DR93_BIFLD
Uncharacterized protein {ECO:0000313|EMBL:CCY95492.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
hypothetical protein
L1_007_061G1_scaffold_661_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25929..26975)
DNA (1047bp) protein (349aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
Anthranilate phosphoribosyltransferase n=2 Tax=Bifidobacterium longum RepID=E8MJ96_BIFL2
anthranilate phosphoribosyltransferase
L1_007_061G1_scaffold_661_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27325..27504
DNA (180bp) protein (60aa)
Uncharacterized protein n=10 Tax=Bifidobacterium RepID=B3DR91_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIJ29488.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L1_007_061G1_scaffold_661_21
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27530..27883
DNA (354bp) protein (118aa)
Transposase n=3 Tax=Bifidobacterium RepID=B3DR90_BIFLD
truncated transposase
Truncated transposase {ECO:0000313|EMBL:CCY95496.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_007_061G1_scaffold_661_22
unknown

Not on your lists

comp(28017..28139)
DNA (123bp) protein (41aa)

This feature has no annotations

L1_007_061G1_scaffold_661_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28194..29057)
DNA (864bp) protein (288aa)
Protein translocase subunit SecA n=6 Tax=Bifidobacterium RepID=D6ZUS7_BIFLJ
preprotein translocase subunit SecA
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
Displaying 23 items

View Taxonomy