ggKbase home page

L1_007_061G1_scaffold_6

Search features with annotation key words

Displaying items 1-30 of 273 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_061G1_scaffold_6_1
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(164..655)
DNA (492bp) protein (164aa)
30S ribosomal protein S9 n=3 Tax=Bifidobacterium RepID=B6XWX2_9BIFI
30S ribosomal protein S9
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1447716 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense PV20-2.;"
L1_007_061G1_scaffold_6_2
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(676..1125)
DNA (450bp) protein (150aa)
50S ribosomal protein L13 n=3 Tax=Bifidobacterium RepID=B6XWX3_9BIFI
50S ribosomal protein L13
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|SAAS:SAAS00083943}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
L1_007_061G1_scaffold_6_3
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1471..3633)
DNA (2163bp) protein (721aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
4-alpha-glucanotransferase n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BQJ3_9BIFI
4-alpha-glucanotransferase
L1_007_061G1_scaffold_6_4
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3703..4410)
DNA (708bp) protein (236aa)
Leucine rich repeat variant n=2 Tax=Bifidobacterium RepID=C0BQJ4_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC14737.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
AbrB family transcriptional regulator
L1_007_061G1_scaffold_6_5
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4465..5103)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6NU27_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC14735.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
hypothetical protein
L1_007_061G1_scaffold_6_6
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5169..6155)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6P206_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC14734.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
2-hydroxyacid dehydrogenase
L1_007_061G1_scaffold_6_7
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6235..7599)
DNA (1365bp) protein (455aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6P849_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC14731.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
metallophosphatase
L1_007_061G1_scaffold_6_8
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7667..8971)
DNA (1305bp) protein (435aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
DNA polymerase IV n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6NU22_9BIFI
DNA polymerase IV
L1_007_061G1_scaffold_6_9
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9846..11297)
DNA (1452bp) protein (484aa)
Carboxylic ester hydrolase {ECO:0000256|RuleBase:RU361235}; EC=3.1.1.- {ECO:0000256|RuleBase:RU361235};; TaxID=1150460 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense JCM 15439 = DSM 21854.;"
Carboxylesterase n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XWY2_9BIFI
esterase
L1_007_061G1_scaffold_6_10
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11294..12883)
DNA (1590bp) protein (530aa)
Arabinofuranohydrolase d3 {ECO:0000313|EMBL:KFI67064.1}; EC=3.2.1.37 {ECO:0000313|EMBL:KFI67064.1};; TaxID=1150460 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense JCM 15439 = DSM 21854.;"
Glycosyl hydrolase, family 43 n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BQK1_9BIFI
pyridine nucleotide-disulfide oxidoreductase
L1_007_061G1_scaffold_6_11
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12880..14019)
DNA (1140bp) protein (380aa)
Reducing end xylose-releasing exo-oligoxylanase n=2 Tax=Bifidobacterium RepID=REOX_BIFAA
xylanase Y
Glycosyl hydrolase {ECO:0000313|EMBL:BAR02996.1}; Glycosyl hydrolase family 8 {ECO:0000313|EMBL:EEG71765.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
L1_007_061G1_scaffold_6_12
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14021..16063)
DNA (2043bp) protein (681aa)
Uncharacterized protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XWB1_9BIFI
Bifidobacterium kashiwanohense JCM 15439 = DSM 21854 DNA, complete genome {ECO:0000313|EMBL:BAQ28464.1}; Putative outer membrane protein {ECO:0000313|EMBL:KFI67066.1}; TaxID=1150460 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense JCM 15439 = DSM 21854.;"
putative outer membrane protein
L1_007_061G1_scaffold_6_13
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16320..17951)
DNA (1632bp) protein (544aa)
Glycosyl hydrolase, family 43 n=2 Tax=Bifidobacterium RepID=B6XWB4_9BIFI
Beta-1,4-xylosidase {ECO:0000313|EMBL:BAR02993.1}; Glycosyl hydrolase, family 43 {ECO:0000313|EMBL:EEG71768.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
beta-xylosidase
L1_007_061G1_scaffold_6_14
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18038..18859)
DNA (822bp) protein (274aa)
ABC transporter, ATP-binding protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BQK6_9BIFI
Peptide ABC transporter ATPase {ECO:0000313|EMBL:KEF28912.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
Oligopeptide transport ATP-binding protein oppF
L1_007_061G1_scaffold_6_15
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18871..19722)
DNA (852bp) protein (284aa)
ABC transporter, ATP-binding protein n=2 Tax=Bifidobacterium RepID=B6XWB6_9BIFI
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KEF28913.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
oligopeptide/dipeptide ABC transporter ATPase/permease
L1_007_061G1_scaffold_6_16
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19728..20657)
DNA (930bp) protein (310aa)
ABC transporter, permease protein n=2 Tax=Bifidobacterium RepID=B6XWB7_9BIFI
Putative peptide ABC transporter permease component {ECO:0000313|EMBL:BAR01252.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
Permease protein of ABC transporter system for peptides
L1_007_061G1_scaffold_6_17
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20666..21658)
DNA (993bp) protein (331aa)
ABC transporter, permease protein n=2 Tax=Bifidobacterium RepID=B6XWB8_9BIFI
Peptide ABC transporter permease {ECO:0000313|EMBL:KEF28915.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
ABC-type dipeptide/oligopeptide/nickel transporter permease
L1_007_061G1_scaffold_6_18
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21746..23284)
DNA (1539bp) protein (513aa)
ABC transporter, substrate-binding protein, family 5 n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XWB9_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:KEF28916.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
dipeptide/oligopeptide ABC transporter periplasmic protein
L1_007_061G1_scaffold_6_19
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23796..24950)
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6P840_9BIFI
N-succinyldiaminopimelate aminotransferase {ECO:0000313|EMBL:KEF28917.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
N-succinyldiaminopimelate aminotransferase
L1_007_061G1_scaffold_6_20
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25031..25351)
DNA (321bp) protein (107aa)
Ferredoxin n=4 Tax=Bifidobacterium RepID=A1A044_BIFAA
fdxC; ferredoxin
Ferredoxin {ECO:0000313|EMBL:AIZ13953.1}; TaxID=1447716 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense PV20-2.;"
L1_007_061G1_scaffold_6_21
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25382..26878)
DNA (1497bp) protein (499aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6NRB1_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC14718.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
amino acid permease
L1_007_061G1_scaffold_6_22
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26909..28108)
DNA (1200bp) protein (400aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6PYB2_9BIFI
UDP-N-acetylenolpyruvoylglucosamine reductase
L1_007_061G1_scaffold_6_23
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(28220..28390)
DNA (171bp) protein (57aa)
50S ribosomal protein L33 n=10 Tax=Bifidobacterium RepID=RL33_BIFAA
50S ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L1_007_061G1_scaffold_6_24
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29065..29358)
DNA (294bp) protein (98aa)
10 kDa chaperonin n=3 Tax=Bifidobacterium RepID=CH10_BIFAA
groES; co-chaperonin GroES
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
L1_007_061G1_scaffold_6_25
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29612..30811)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6P1Z2_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC14714.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
membrane protein
L1_007_061G1_scaffold_6_26
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30910..31530)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6PYA7_9BIFI
Acetyltransferase {ECO:0000313|EMBL:KEF28925.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
acetyltransferase
L1_007_061G1_scaffold_6_27
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31532..32290
DNA (759bp) protein (253aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6NU01_9BIFI
5-formyltetrahydrofolate cyclo-ligase
L1_007_061G1_scaffold_6_28
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32388..32570
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6P1Y8_9BIFI
FmdB family transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:CDC14709.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
L1_007_061G1_scaffold_6_29
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32747..33436
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6NRA0_9BIFI
Flagellar basal body P-ring biosynthesis protein FlgA {ECO:0000313|EMBL:KEF28928.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
flagellar basal body P-ring biosynthesis protein FlgA
L1_007_061G1_scaffold_6_30
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33532..33798)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6P827_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC14706.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
hypothetical protein
Displaying items 1-30 of 273 in total

View Taxonomy