ggKbase home page

L1_007_122G1_scaffold_1012

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_1012_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..83)
DNA (81bp) protein (27aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZVI9_BIFLJ
ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:AIW44074.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L1_007_122G1_scaffold_1012_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(89..766)
DNA (678bp) protein (226aa)
HisM1 n=6 Tax=Bifidobacterium longum RepID=E4R121_BIFLM
ABC transporter permease
ABC transporter, permease protein {ECO:0000313|EMBL:EEQ56170.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
L1_007_122G1_scaffold_1012_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(766..1605)
DNA (840bp) protein (280aa)
HisJ1 n=3 Tax=Bifidobacterium longum RepID=E4R120_BIFLM
hisJ1; hisj1
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEY33596.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L1_007_122G1_scaffold_1012_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1637..2479)
DNA (843bp) protein (281aa)
amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) (EC:3.6.3.-)
Amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) {ECO:0000313|EMBL:CBK69835.1}; EC=3.6.3.- {ECO:0000313|EMBL:CBK69835.1};; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
Amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) n=1 Tax=Bifidobacterium longum subsp. longum F8 RepID=D6DBG4_BIFLN
L1_007_122G1_scaffold_1012_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3016..3987
DNA (972bp) protein (324aa)
Uncharacterized protein n=14 Tax=Bifidobacterium RepID=Q8G862_BIFLO
Protein of unknown function (DUF559).
Uncharacterized protein {ECO:0000313|EMBL:CBK69837.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L1_007_122G1_scaffold_1012_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(4445..6244)
DNA (1800bp) protein (600aa)
Aspartate--tRNA ligase n=7 Tax=Bifidobacterium longum RepID=SYD_BIFLD
Aspartyl-tRNA synthase {ECO:0000313|EMBL:BAJ67099.1}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
aspS; aspartyl-tRNA synthetase
L1_007_122G1_scaffold_1012_7
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(6207..7562)
DNA (1356bp) protein (452aa)
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
Histidine--tRNA ligase n=2 Tax=Bifidobacterium RepID=SYH_BIFLO
L1_007_122G1_scaffold_1012_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7662..9122
DNA (1461bp) protein (487aa)
Uncharacterized protein n=7 Tax=Bifidobacterium longum RepID=Q8G865_BIFLO
hypothetical protein
PF03993 domain protein {ECO:0000313|EMBL:EIJ28074.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L1_007_122G1_scaffold_1012_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9342..11102)
DNA (1761bp) protein (587aa)
Putative 5'-nucleotidase n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MV25_BIFL1
5'-nucleotidase {ECO:0000313|EMBL:KEY26192.1}; TaxID=1457183 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis EK3.;"
5'-nucleotidase
L1_007_122G1_scaffold_1012_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11274..12032)
DNA (759bp) protein (253aa)
Uncharacterized protein, putative amidase {ECO:0000313|EMBL:CBK69839.1}; EC=3.5.2.10 {ECO:0000313|EMBL:CBK69839.1};; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
Amidase-like protein n=3 Tax=Bifidobacterium longum RepID=E4R113_BIFLM
amidase
L1_007_122G1_scaffold_1012_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12118..13494)
DNA (1377bp) protein (459aa)
Proline/betaine transport protein n=6 Tax=Bifidobacterium longum RepID=E8MEH7_BIFL2
MFS transporter
MFS transporter {ECO:0000313|EMBL:AIW44083.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L1_007_122G1_scaffold_1012_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13684..15177)
DNA (1494bp) protein (498aa)
Polyketide synthase expression regulator n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4R112_BIFLM
Polyketide synthase {ECO:0000313|EMBL:KEY33587.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
polyketide synthase expression regulator
Displaying 12 items

View Taxonomy