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L1_007_122G1_scaffold_8

Search features with annotation key words

Displaying items 1-30 of 331 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_8_1
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..120)
DNA (120bp) protein (40aa)
DegT/DnrJ/EryC1/StrS aminotransferase family protein n=1 Tax=Eubacterium sp. CAG:38 RepID=R7H775_9FIRM
DegT/DnrJ/EryC1/StrS aminotransferase family protein {ECO:0000313|EMBL:CDE35225.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
hypothetical protein
L1_007_122G1_scaffold_8_2
Clostridium hathewayi CAG:224, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(182..688)
DNA (507bp) protein (169aa)
Putative transcription antiterminator n=1 Tax=Clostridium hathewayi CAG:224 RepID=R5SYA0_9CLOT
Putative transcription antiterminator {ECO:0000313|EMBL:CCZ58233.1}; TaxID=1263067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium hathewayi CAG:224.;"
Transcription antiterminator
L1_007_122G1_scaffold_8_3
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(959..2845)
DNA (1887bp) protein (629aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_63FAA RepID=F3ADU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG84131.1}; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
Predicted nucleoside-diphosphate sugar epimerases
L1_007_122G1_scaffold_8_4
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

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comp(2878..4365)
DNA (1488bp) protein (496aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5Y0A4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA14636.1}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
cell envelope-related function transcriptional attenuator common domain
L1_007_122G1_scaffold_8_5
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4386..5180)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0F7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG74294.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
Bacterial Ig-like domain (group 3).
L1_007_122G1_scaffold_8_6
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5201..5893)
DNA (693bp) protein (231aa)
Capsular exopolysaccharide family n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0F8_9CLOT
Capsular exopolysaccharide family {ECO:0000313|EMBL:EEG74295.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
polysaccharide biosynthesis protein
L1_007_122G1_scaffold_8_7
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5912..6688)
DNA (777bp) protein (259aa)
Chain length determinant protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0F9_9CLOT
Chain length determinant protein {ECO:0000313|EMBL:EEG74296.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
Capsular polysaccharide biosynthesis protein
L1_007_122G1_scaffold_8_8
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6720..7454)
DNA (735bp) protein (245aa)
Capsular polysaccharide biosynthesis protein (EC:3.1.3.48)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BMB3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD15616.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L1_007_122G1_scaffold_8_9
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7614..8279)
DNA (666bp) protein (222aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase n=2 Tax=unclassified Lachnospiraceae RepID=E5XEE2_9FIRM
L1_007_122G1_scaffold_8_10
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8327..9562)
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WX75_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD08621.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
conserved hypothetical protein TIGR00275
L1_007_122G1_scaffold_8_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9573..10487)
DNA (915bp) protein (305aa)
SIS domain protein n=2 Tax=Clostridium RepID=B6FS03_9CLOT
SIS domain protein {ECO:0000313|EMBL:EEA81215.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Transcriptional regulators
L1_007_122G1_scaffold_8_12
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10731..12143)
DNA (1413bp) protein (471aa)
Pyruvate/oxaloacetate carboxyltransferase (EC:4.1.1.3)
Conserved carboxylase domain protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BWI7_9CLOT
Conserved carboxylase domain protein {ECO:0000313|EMBL:EEG75669.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
L1_007_122G1_scaffold_8_13
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12163..13314)
DNA (1152bp) protein (384aa)
sodium ion-translocating decarboxylase, beta subunit (EC:4.1.1.3 4.1.1.70)
Sodium ion-translocating decarboxylase, beta subunit n=5 Tax=Clostridiales RepID=A5KLB4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26979.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L1_007_122G1_scaffold_8_14
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13341..13706)
DNA (366bp) protein (122aa)
Biotin-requiring enzyme n=2 Tax=Coprococcus RepID=C0B720_9FIRM
Biotin-requiring enzyme {ECO:0000313|EMBL:CDB86287.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
Biotin carboxyl carrier protein
L1_007_122G1_scaffold_8_15
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13719..14492)
DNA (774bp) protein (258aa)
Oxaloacetate decarboxylase gamma chain {ECO:0000256|RuleBase:RU004278}; EC=4.1.1.3 {ECO:0000256|RuleBase:RU004278};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Oxaloacetate decarboxylase gamma chain n=2 Tax=Ruminococcus lactaris RepID=B5CS23_9FIRM
sodium pump decarboxylases, gamma subunit
L1_007_122G1_scaffold_8_16
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14507..15943)
DNA (1437bp) protein (479aa)
Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) (EC:6.4.1.3)
Carboxyl transferase domain protein n=1 Tax=Coprococcus comes CAG:19 RepID=R6LK61_9FIRM
Carboxyl transferase domain protein {ECO:0000313|EMBL:CDB86285.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
L1_007_122G1_scaffold_8_17
unknown

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16296..16601
DNA (306bp) protein (102aa)

This feature has no annotations

L1_007_122G1_scaffold_8_18
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17000..18376
DNA (1377bp) protein (459aa)
Transporter, major facilitator family n=1 Tax=Clostridium sp. D5 RepID=F0Z1P8_9CLOT
Transporter, major facilitator family {ECO:0000313|EMBL:EGB92350.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
amino acid/peptide transporter
L1_007_122G1_scaffold_8_19
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18533..20323
DNA (1791bp) protein (597aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:105 RepID=R5D4W2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX73834.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
peptidase M24
L1_007_122G1_scaffold_8_20
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20390..21658)
DNA (1269bp) protein (423aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Clostridium sp. D5 RepID=F0Z5V6_9CLOT
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EGB90571.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_122G1_scaffold_8_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21797..22717)
DNA (921bp) protein (307aa)
CAAX amino terminal protease family protein n=7 Tax=Clostridium difficile RepID=D5Q1H4_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCK96908.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
hypothetical protein
L1_007_122G1_scaffold_8_22
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22779..23810)
DNA (1032bp) protein (344aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=4 Tax=Clostridiales RepID=A7B5J7_RUMGN
L1_007_122G1_scaffold_8_23
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23865..24434)
DNA (570bp) protein (190aa)
Segregation and condensation protein B n=2 Tax=Clostridiales RepID=B0ND60_CLOSV
Segregation and condensation protein B {ECO:0000256|HAMAP-Rule:MF_01804, ECO:0000256|SAAS:SAAS00086417}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
segregation and condensation protein B
L1_007_122G1_scaffold_8_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24403..25191)
DNA (789bp) protein (263aa)
Segregation and condensation protein A n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS26_9CLOT
Segregation and condensation protein A {ECO:0000256|HAMAP-Rule:MF_01805, ECO:0000256|SAAS:SAAS00093938}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L1_007_122G1_scaffold_8_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25255..26151)
DNA (897bp) protein (299aa)
Ser/Thr phosphatase family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS31_9CLOT
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:EEA81101.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted phosphohydrolases
L1_007_122G1_scaffold_8_26
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26148..26960)
DNA (813bp) protein (271aa)
HAD hydrolase, family IIA n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MG50_9FIRM
HAD hydrolase, family IIA {ECO:0000313|EMBL:EOS69676.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
HAD family hydrolase
L1_007_122G1_scaffold_8_27
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27007..28191)
DNA (1185bp) protein (395aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KQ10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN30552.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
L1_007_122G1_scaffold_8_28
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28259..29158)
DNA (900bp) protein (300aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=5 Tax=Clostridiales RepID=A5KK53_9FIRM
Signal transduction histidine kinase
L1_007_122G1_scaffold_8_29
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29159..30007)
DNA (849bp) protein (283aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3AN09_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG85739.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
hypothetical protein
L1_007_122G1_scaffold_8_30
Firmicutes bacterium CAG:56, Firmicutes, Bacteria

Not on your lists

comp(29991..30917)
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:56 RepID=R6CCY4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA63157.1}; TaxID=1263031 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:56.;"
ABC-type multidrug transport system, ATPase component
Displaying items 1-30 of 331 in total

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