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L1_007_122G1_scaffold_110

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Displaying items 1-30 of 231 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_110_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(389..1420)
-----------------
DNA (1032bp)
protein (344aa)
Ribosomal RNA small subunit methyltransferase C {ECO:0000256|HAMAP-Rule:MF_01862, ECO:0000256|SAAS:SAAS00048249}; EC=2.1.1.172 {ECO:0000256|HAMAP-Rule:MF_01862, ECO:0000256|SAAS:SAAS00048248};; 16S rRNA m2G1207 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01862}; rRNA (guanine-N(2)-)-methyltransferase RsmC {ECO:0000256|HAMAP-Rule:MF_01862}; TaxID=1444134 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-182-04_S3_C1.;"
Ribosomal RNA small subunit methyltransferase C n=128 Tax=Escherichia coli RepID=RSMC_ECOLC
rsmC; 16S RNA G1207 methylase RsmC
L1_007_122G1_scaffold_110_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1523..1936
-----------------
DNA (414bp)
protein (138aa)
DNA polymerase III subunit psi n=841 Tax=Enterobacteriaceae RepID=C3SE92_ECOLX
DNA polymerase III psi subunit
DNA polymerase III subunit psi {ECO:0000256|PIRNR:PIRNR029225}; TaxID=1169376 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE112.;"
L1_007_122G1_scaffold_110_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1905..2366
-----------------
DNA (462bp)
protein (154aa)
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:EFJ97689.1}; EC=2.3.1.128 {ECO:0000313|EMBL:EFJ97689.1};; TaxID=749537 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 115-1.;"
rimI; Ribosomal-protein-S18p-alanine acetyltransferase (EC:2.3.1.-)
Ribosomal-protein-alanine acetyltransferase n=943 Tax=Enterobacteriaceae RepID=RIMI_ECO57
L1_007_122G1_scaffold_110_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2366..3043
-----------------
DNA (678bp)
protein (226aa)
Pyrimidine 5'-nucleotidase YjjG n=301 Tax=Escherichia coli RepID=YJJG_ECO57
yjjG; nucleotidase
HAD hydrolase, TIGR02254 family {ECO:0000313|EMBL:EFK17201.1}; TaxID=749538 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 116-1.;"
L1_007_122G1_scaffold_110_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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3134..4723
-----------------
DNA (1590bp)
protein (530aa)
Peptide chain release factor 3 n=402 Tax=Enterobacteriaceae RepID=RF3_ECO24
prfC; peptide chain release factor 3
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1444275 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-392-07_S4_C3.;"
L1_007_122G1_scaffold_110_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5116..5721
-----------------
DNA (606bp)
protein (202aa)
Osmotically-inducible protein Y n=946 Tax=Enterobacteriaceae RepID=OSMY_ECOL6
osmY; hypothetical protein
Phospholipid-binding domain protein {ECO:0000313|EMBL:ESA83543.1}; TaxID=1268986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907713.;"
L1_007_122G1_scaffold_110_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5848..6009
-----------------
DNA (162bp)
protein (54aa)
UPF0391 membrane protein YtjA n=1448 Tax=Enterobacteriaceae RepID=YTJA_ECO24
hypothetical protein
UPF0391 membrane protein YtjA {ECO:0000256|HAMAP-Rule:MF_01361}; TaxID=550672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B088.;"
L1_007_122G1_scaffold_110_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6131..7204
-----------------
DNA (1074bp)
protein (358aa)
Esterase n=13 Tax=Escherichia coli RepID=L3F730_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDK82623.1}; TaxID=1432548 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli IS25.;"
L1_007_122G1_scaffold_110_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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7201..7983
-----------------
DNA (783bp)
protein (261aa)
putative deoxyribonuclease (EC:3.1.21.-)
Uncharacterized deoxyribonuclease yjjV {ECO:0000313|EMBL:EFU96873.1}; EC=3.1.21.- {ECO:0000313|EMBL:EFU96873.1};; TaxID=670892 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3431.;"
Hydrolase, TatD family n=29 Tax=Escherichia coli RepID=D7Y3V2_ECOLX
L1_007_122G1_scaffold_110_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8500..9204)
-----------------
DNA (705bp)
protein (235aa)
YjjW family glycine radical enzyme activase n=4 Tax=Escherichia coli RepID=L3IKC6_ECOLX
YjjW family glycine radical enzyme activase {ECO:0000313|EMBL:EOV51536.1}; TaxID=1182671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE64.;"
hypothetical protein
L1_007_122G1_scaffold_110_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9335..10885)
-----------------
DNA (1551bp)
protein (517aa)
Uncharacterized protein n=77 Tax=Escherichia coli RepID=C8TQD4_ECO26
yjjI; hypothetical protein
YjjI family glycine radical enzyme {ECO:0000313|EMBL:EOV51537.1}; TaxID=1182671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE64.;"
L1_007_122G1_scaffold_110_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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11143..11922
-----------------
DNA (780bp)
protein (260aa)
deoC; deoxyribose-phosphate aldolase (EC:4.1.2.4)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00592, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00592};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00592, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00592}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00592}; TaxID=749532 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 78-1.;"
Deoxyribose-phosphate aldolase n=1003 Tax=Enterobacteriaceae RepID=DEOC_ECO24
L1_007_122G1_scaffold_110_13
Shigella boydii, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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12049..13371
-----------------
DNA (1323bp)
protein (441aa)
deoA; thymidine phosphorylase (EC:2.4.2.4)
Thymidine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01628, ECO:0000256|SAAS:SAAS00031984}; EC=2.4.2.4 {ECO:0000256|HAMAP-Rule:MF_01628, ECO:0000256|SAAS:SAAS00031985};; TdRPase {ECO:0000256|HAMAP-Rule:MF_01628}; TaxID=932676 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella boydii ATCC 9905.;"
Thymidine phosphorylase n=913 Tax=Enterobacteriaceae RepID=TYPH_ECO24
L1_007_122G1_scaffold_110_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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13423..14646
-----------------
DNA (1224bp)
protein (408aa)
phosphopentomutase (EC:5.4.2.7)
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|HAMAP-Rule:MF_00740}; TaxID=679207 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 107-1.;"
Phosphopentomutase n=1128 Tax=Enterobacteriaceae RepID=DEOB_ECO24
L1_007_122G1_scaffold_110_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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14726..15445
-----------------
DNA (720bp)
protein (240aa)
Purine nucleoside phosphorylase DeoD-type {ECO:0000256|HAMAP-Rule:MF_01627}; Short=PNP {ECO:0000256|HAMAP-Rule:MF_01627};; EC=2.4.2.1 {ECO:0000256|HAMAP-Rule:MF_01627};; TaxID=1268985 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907710.;"
Purine nucleoside phosphorylase DeoD-type n=1 Tax=Escherichia coli 907446 RepID=V0SL00_ECOLX
purine-nucleoside phosphorylase
L1_007_122G1_scaffold_110_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15720..15869)
-----------------
DNA (150bp)
protein (50aa)
Conserved domain protein n=188 Tax=Enterobacteriaceae RepID=J7QK42_ECOLX
hypothetical protein
Putative helix-turn-helix domain protein {ECO:0000313|EMBL:KDX22308.1}; TaxID=1444231 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-156-04_S4_C2.;"
L1_007_122G1_scaffold_110_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15901..16917)
-----------------
DNA (1017bp)
protein (339aa)
Lipoate-protein ligase A {ECO:0000256|HAMAP-Rule:MF_01602, ECO:0000256|SAAS:SAAS00214764}; EC=2.7.7.63 {ECO:0000256|HAMAP-Rule:MF_01602, ECO:0000256|SAAS:SAAS00026637};; Lipoate--protein ligase {ECO:0000256|HAMAP-Rule:MF_01602}; TaxID=1182699 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE100.;"
Lipoate-protein ligase A n=64 Tax=Enterobacteriaceae RepID=LPLA_SHISS
lipoate-protein ligase A
L1_007_122G1_scaffold_110_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16945..17589)
-----------------
DNA (645bp)
protein (215aa)
Protein smp n=1 Tax=Escherichia coli BIDMC 19C RepID=U7CBJ5_ECOLX
hypothetical protein
Protein smp {ECO:0000313|EMBL:EOW04921.1}; TaxID=1182698 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE98.;"
L1_007_122G1_scaffold_110_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17695..18663
-----------------
DNA (969bp)
protein (323aa)
serB; phosphoserine phosphatase (EC:3.1.3.3)
Phosphoserine phosphatase {ECO:0000313|EMBL:EDU62720.1}; EC=3.1.3.3 {ECO:0000313|EMBL:EDU62720.1};; TaxID=344610 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 53638.;"
3-phosphoserine phosphatase n=234 Tax=Escherichia RepID=J7RCY4_ECOLX
L1_007_122G1_scaffold_110_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18712..20094
-----------------
DNA (1383bp)
protein (461aa)
DNA repair protein radA n=4 Tax=Escherichia coli RepID=L3I0Z8_ECOLX
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1182671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE64.;"
radA; DNA repair protein RadA
L1_007_122G1_scaffold_110_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20115..21347
-----------------
DNA (1233bp)
protein (411aa)
Nicotinamide-nucleotide adenylyltransferase n=80 Tax=Enterobacteriaceae RepID=B1LEJ5_ECOSM
nadR; nadAB transcriptional regulator,Trifunctional NAD biosynthesis/regulator protein NadR,bifunctional DNA-binding transcriptional repressor/NMN adenylyltransferase,Predicted ATPase/kinase involved in NAD metabolism,nicotinamide-nucleotide adenylyltransferase,Helix-turn-helix
Trifunctional NAD biosynthesis/regulator protein NadR {ECO:0000313|EMBL:EQZ93943.1}; TaxID=1281269 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3718-1.;"
L1_007_122G1_scaffold_110_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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21381..21548
-----------------
DNA (168bp)
protein (56aa)
Toxin-antitoxin system, antitoxin component, Xre family n=12 Tax=Escherichia coli RepID=D7Y2X8_ECOLX
Putative regulatory protein {ECO:0000313|EMBL:CDK82640.1}; TaxID=1432548 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli IS25.;"
hypothetical protein
L1_007_122G1_scaffold_110_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(21655..23322)
-----------------
DNA (1668bp)
protein (556aa)
Uncharacterized ABC transporter ATP-binding protein YjjK n=944 Tax=Enterobacteriaceae RepID=YJJK_ECO57
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:AFS76181.1}; TaxID=1133852 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O104:H4 (strain 2011C-3493).;"
ABC transporter ATP-binding protein
L1_007_122G1_scaffold_110_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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23533..25470
-----------------
DNA (1938bp)
protein (646aa)
Soluble lytic murein transglycosylase {ECO:0000313|EMBL:EMX57106.1}; EC=4.2.2.n1 {ECO:0000313|EMBL:EMX57106.1};; TaxID=1116139 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP020980.2.;"
Soluble lytic murein transglycosylase n=502 Tax=Enterobacteriaceae RepID=SLT_ECO57
lytic murein transglycosylase
L1_007_122G1_scaffold_110_25
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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25590..25886
-----------------
DNA (297bp)
protein (99aa)
Trp operon repressor n=909 Tax=Proteobacteria RepID=TRPR_ECO24
Trp operon repressor
Trp operon repressor {ECO:0000256|HAMAP-Rule:MF_00475, ECO:0000256|SAAS:SAAS00234182}; TaxID=766145 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri VA-6.;"
L1_007_122G1_scaffold_110_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(25923..26435)
-----------------
DNA (513bp)
protein (171aa)
Non-canonical purine NTP phosphatase {ECO:0000256|HAMAP-Rule:MF_00648}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_00648};; Non-standard purine NTP phosphatase {ECO:0000256|HAMAP-Rule:MF_00648}; Nucleoside-triphosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_00648}; TaxID=244319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O26:H11.;"
Non-canonical purine NTP phosphatase n=155 Tax=Proteobacteria RepID=NCPP_ECO55
inosine/xanthosine triphosphatase
L1_007_122G1_scaffold_110_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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26487..27134
-----------------
DNA (648bp)
protein (216aa)
phosphoglycerate mutase (EC:5.4.2.1)
Probable phosphoglycerate mutase GpmB {ECO:0000256|HAMAP-Rule:MF_01040, ECO:0000256|SAAS:SAAS00013984}; EC=5.4.2.- {ECO:0000256|HAMAP-Rule:MF_01040, ECO:0000256|SAAS:SAAS00013981};; PGAM {ECO:0000256|HAMAP-Rule:MF_01040}; Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01040}; TaxID=550676 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B185.;"
Probable phosphoglycerate mutase GpmB n=978 Tax=Enterobacteriaceae RepID=GPMB_ECO24
L1_007_122G1_scaffold_110_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(27131..28000)
-----------------
DNA (870bp)
protein (290aa)
Right origin-binding protein n=1075 Tax=Enterobacteriaceae RepID=ROB_ECO57
right origin-binding protein
Right origin-binding protein {ECO:0000313|EMBL:AFJ32083.1}; TaxID=741093 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli Xuzhou21.;"
L1_007_122G1_scaffold_110_29
Shigella boydii, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28211..28684
-----------------
DNA (474bp)
protein (158aa)
Protein CreA n=1407 Tax=Enterobacteriaceae RepID=CREA_ECO57
hypothetical protein
Protein CreA {ECO:0000256|PIRNR:PIRNR003174}; Catabolite regulation protein A {ECO:0000256|PIRNR:PIRNR003174}; TaxID=932676 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella boydii ATCC 9905.;"
L1_007_122G1_scaffold_110_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28697..29386
-----------------
DNA (690bp)
protein (230aa)
Two component transcriptional regulator, winged helix family n=54 Tax=Enterobacteriaceae RepID=B1IS21_ECOLC
creB; DNA-binding response regulator CreB
Response regulator receiver family protein {ECO:0000313|EMBL:ENB04786.1}; TaxID=1116036 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2875150.;"
Displaying items 1-30 of 231 in total

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