ggKbase home page

L1_007_122G1_scaffold_138

Search features with annotation key words

Displaying items 1-30 of 76 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_138_1
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1739..1924)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XAB9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA11800.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
L1_007_122G1_scaffold_138_2
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2231..3046)
DNA (816bp) protein (272aa)
ABC 3 transport family protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XHC2_9CLOT
ABC 3 transport family protein {ECO:0000313|EMBL:CDA11799.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
ABC-3 protein
L1_007_122G1_scaffold_138_3
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3039..3746)
DNA (708bp) protein (236aa)
ABC-type Mn/Zn transport systems, ATPase component (EC:3.6.3.-)
UPI0003D693B4 related cluster n=1 Tax=unknown RepID=UPI0003D693B4
Uncharacterized protein {ECO:0000313|EMBL:ETI94525.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
L1_007_122G1_scaffold_138_4
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3774..4841)
DNA (1068bp) protein (356aa)
UPI0003D5DD1A related cluster n=1 Tax=unknown RepID=UPI0003D5DD1A
Uncharacterized protein {ECO:0000313|EMBL:ETI94524.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
metal ABC transporter periplasmic protein
L1_007_122G1_scaffold_138_5
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4834..5271)
DNA (438bp) protein (146aa)
Transcriptional regulator Fur family n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XSN0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ETI94523.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
Fe2+/Zn2+ uptake regulation proteins
L1_007_122G1_scaffold_138_6
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5524..7047)
DNA (1524bp) protein (508aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XAB4_9CLOT
L1_007_122G1_scaffold_138_7
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7062..7538)
DNA (477bp) protein (159aa)
Transcription elongation factor GreA n=2 Tax=Clostridiales RepID=B0A6M7_9FIRM
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
greA; transcription elongation factor GreA
L1_007_122G1_scaffold_138_8
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7646..8614)
DNA (969bp) protein (323aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
tRNA-dihydrouridine synthase n=2 Tax=Clostridiales RepID=B0A6M6_9FIRM
tRNA-dihydrouridine synthase
L1_007_122G1_scaffold_138_9
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8900..9670)
DNA (771bp) protein (257aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
Type III pantothenate kinase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6M5_9FIRM
pantothenate kinase
L1_007_122G1_scaffold_138_10
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9688..10293)
DNA (606bp) protein (202aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0A6M4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA11791.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
hypothetical protein
L1_007_122G1_scaffold_138_11
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10573..11550)
DNA (978bp) protein (326aa)
Peptidase family T4 n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6M3_9FIRM
Peptidase family T4 {ECO:0000313|EMBL:EDQ97835.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
peptidase
L1_007_122G1_scaffold_138_12
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11543..12526)
DNA (984bp) protein (328aa)
Biotin--[acetyl-CoA-carboxylase] ligase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6M2_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
birA; BirA bifunctional protein [includes: biotin operon repressor and biotin--[acetyl-CoA-carboxylase] synthetase
L1_007_122G1_scaffold_138_13
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12719..14719)
DNA (2001bp) protein (667aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
ATP-dependent zinc metalloprotease FtsH n=2 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6M1_9FIRM
cell division protein
L1_007_122G1_scaffold_138_14
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14751..16139)
DNA (1389bp) protein (463aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
UPI0003D69465 related cluster n=1 Tax=unknown RepID=UPI0003D69465
ATPase
L1_007_122G1_scaffold_138_15
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16431..16838)
DNA (408bp) protein (136aa)
UPI0003D5DCC8 related cluster n=1 Tax=unknown RepID=UPI0003D5DCC8
Uncharacterized protein {ECO:0000313|EMBL:ETI96325.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
hypothetical protein
L1_007_122G1_scaffold_138_16
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17005..17712)
DNA (708bp) protein (236aa)
Cell Wall Hydrolase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6L8_9FIRM
Cell Wall Hydrolase {ECO:0000313|EMBL:EDQ97830.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
spore cortex-lytic enzyme
L1_007_122G1_scaffold_138_17
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17735..18457)
DNA (723bp) protein (241aa)
Stage II sporulation protein R n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6L7_9FIRM
Stage II sporulation protein R {ECO:0000313|EMBL:EDQ97829.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
spoIIR; stage II sporulation protein
L1_007_122G1_scaffold_138_18
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18702..19370)
DNA (669bp) protein (223aa)
UPI0003D641CC related cluster n=1 Tax=unknown RepID=UPI0003D641CC
Uncharacterized protein {ECO:0000313|EMBL:ETI96328.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
GntR family transcriptional regulator
L1_007_122G1_scaffold_138_19
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19363..20244)
DNA (882bp) protein (294aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5Y560_9CLOT
L1_007_122G1_scaffold_138_20
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20375..21925)
DNA (1551bp) protein (517aa)
LysM domain protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XSL5_9CLOT
LysM domain protein {ECO:0000313|EMBL:CDA11781.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
cell wall hydrolase
L1_007_122G1_scaffold_138_21
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22008..22277)
DNA (270bp) protein (90aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0A6L3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDQ97825.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
hypothetical protein
L1_007_122G1_scaffold_138_22
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22481..23344)
DNA (864bp) protein (288aa)
Sporulation-specific protease n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XHA4_9CLOT
Sporulation-specific protease {ECO:0000313|EMBL:CDA11779.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
peptidase
L1_007_122G1_scaffold_138_23
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23494..24096
DNA (603bp) protein (201aa)
UPI0003D6060C related cluster n=1 Tax=unknown RepID=UPI0003D6060C
Uncharacterized protein {ECO:0000313|EMBL:ETI96333.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
hypothetical protein
L1_007_122G1_scaffold_138_24
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24185..24532)
DNA (348bp) protein (116aa)
UPI0003D64747 related cluster n=1 Tax=unknown RepID=UPI0003D64747
Uncharacterized protein {ECO:0000313|EMBL:ETI96334.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
transcriptional regulator
L1_007_122G1_scaffold_138_25
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24636..25175
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6K8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDQ97820.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
hypothetical protein
L1_007_122G1_scaffold_138_26
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25287..27059)
DNA (1773bp) protein (591aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|SAAS:SAAS00085897};; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
Putative 1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6K7_9FIRM
L1_007_122G1_scaffold_138_27
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27375..27872)
DNA (498bp) protein (166aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0A6K6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA11775.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
hypothetical protein
L1_007_122G1_scaffold_138_28
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27934..28638)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XHA0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA11774.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
hypothetical protein
L1_007_122G1_scaffold_138_29
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28657..29322)
DNA (666bp) protein (222aa)
Pseudouridine synthase, RluA family n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6K4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETI96075.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
pseudouridylate synthase
L1_007_122G1_scaffold_138_30
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29322..30197)
DNA (876bp) protein (292aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0A6K3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDQ97815.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
putative SAM-dependent methyltransferase
Displaying items 1-30 of 76 in total

View Taxonomy