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L1_007_122G1_scaffold_159

Search features with annotation key words

Displaying items 1-30 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_159_1
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(189..1196)
DNA (1008bp) protein (336aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BX58_9CLOT
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EEG75466.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
thioredoxin reductase
L1_007_122G1_scaffold_159_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1388..1744)
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=2 Tax=Clostridium RepID=B6FR97_9CLOT
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
LSU ribosomal protein L20P
L1_007_122G1_scaffold_159_3
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1775..1972)
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=2 Tax=environmental samples RepID=R5D5L7_9FIRM
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
LSU ribosomal protein L35P
L1_007_122G1_scaffold_159_4
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2008..2502)
DNA (495bp) protein (165aa)
Translation initiation factor IF-3 n=5 Tax=Clostridiales RepID=A5KKE1_9FIRM
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
bacterial translation initiation factor 3 (bIF-3)
L1_007_122G1_scaffold_159_5
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2868..4217
DNA (1350bp) protein (450aa)
Uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BWW9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG75567.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
Bacillus/Clostridium GerA spore germination protein.
L1_007_122G1_scaffold_159_6
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4312..5175
DNA (864bp) protein (288aa)
EDD domain protein DegV family n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PY41_9FIRM
EDD domain protein DegV family {ECO:0000313|EMBL:CDC14632.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
EDD domain protein, DegV family
L1_007_122G1_scaffold_159_7
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5324..6571)
DNA (1248bp) protein (416aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
glyA; Serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Dorea sp. CAG:105 RepID=R5CZP5_9FIRM
L1_007_122G1_scaffold_159_8
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6590..7093)
DNA (504bp) protein (168aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NTS2_9FIRM
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000313|EMBL:CDC14630.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_122G1_scaffold_159_9
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7234..8007)
DNA (774bp) protein (258aa)
ABC transporter, ATP-binding protein n=2 Tax=Coprococcus RepID=C0BB62_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEG89336.1}; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
ABC-type uncharacterized transport system, ATPase component
L1_007_122G1_scaffold_159_10
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8000..8881)
DNA (882bp) protein (294aa)
Branched-chain amino acid ABC transporter, permease protein n=2 Tax=Ruminococcus lactaris RepID=B5CSE7_9FIRM
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EDN76559.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
ABC-type uncharacterized transport system, permease component
L1_007_122G1_scaffold_159_11
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8904..9914)
DNA (1011bp) protein (337aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BTI6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD18122.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ABC-type uncharacterized transport system, periplasmic component
L1_007_122G1_scaffold_159_12
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10351..10869)
DNA (519bp) protein (173aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Clostridium sp. CAG:43 RepID=R7A198_9CLOT
L1_007_122G1_scaffold_159_13
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10962..11834
DNA (873bp) protein (291aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
Shikimate dehydrogenase n=4 Tax=Clostridium butyricum RepID=B1QZ28_CLOBU
hypothetical protein
L1_007_122G1_scaffold_159_14
Eubacterium sp. 3_1_31, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12179..12742)
DNA (564bp) protein (188aa)
Putative uncharacterized protein n=1 Tax=Eubacterium sp. 3_1_31 RepID=H1BM52_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO83863.1}; TaxID=457402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 3_1_31.;"
hypothetical protein
L1_007_122G1_scaffold_159_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12909..13607)
DNA (699bp) protein (233aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=E4LPV6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQJ58615.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L1_007_122G1_scaffold_159_16
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13915..14835)
DNA (921bp) protein (307aa)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans CAG:28.;"
homoserine O-succinyltransferase (EC:2.3.1.46)
Homoserine O-succinyltransferase n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WRQ6_9FIRM
L1_007_122G1_scaffold_159_17
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14813..16168)
DNA (1356bp) protein (452aa)
Uncharacterized protein n=2 Tax=Coprococcus RepID=C0BB54_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB84357.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
Predicted permease
L1_007_122G1_scaffold_159_18
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16352..16666)
DNA (315bp) protein (105aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WRQ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX74071.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
Domain of Unknown Function (DUF1540).
L1_007_122G1_scaffold_159_19
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16720..18645)
DNA (1926bp) protein (642aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase (EC:3.1.1.- 6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JJ77_9FIRM
L1_007_122G1_scaffold_159_20
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18667..19524)
DNA (858bp) protein (286aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MKB5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS71554.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
Aldo/keto reductases, related to diketogulonate reductase
L1_007_122G1_scaffold_159_21
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19973..20704)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BX41_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG75639.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
hypothetical protein
L1_007_122G1_scaffold_159_22
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20704..21216)
DNA (513bp) protein (171aa)
Uncharacterized protein n=4 Tax=Lachnospiraceae RepID=S2YBQ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG86111.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
hypothetical protein
L1_007_122G1_scaffold_159_23
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21399..21632
DNA (234bp) protein (78aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NCR8_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN39590.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
hypothetical protein
L1_007_122G1_scaffold_159_24
unknown

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comp(21766..21918)
DNA (153bp) protein (51aa)

This feature has no annotations

L1_007_122G1_scaffold_159_25
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22215..23225
DNA (1011bp) protein (337aa)
Aspartate--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088413}; EC=6.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088403};; Asparagine synthetase A {ECO:0000256|HAMAP-Rule:MF_00555}; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
aspartate--ammonia ligase, AsnA-type (EC:6.3.1.1)
Aspartate--ammonia ligase n=2 Tax=Coprococcus RepID=C0BB43_9FIRM
L1_007_122G1_scaffold_159_26
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23343..24617)
DNA (1275bp) protein (425aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
adenylosuccinate synthase (EC:6.3.4.4)
Adenylosuccinate synthetase n=2 Tax=Lachnospiraceae RepID=F3AKU9_9FIRM
L1_007_122G1_scaffold_159_27
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24750..26309)
DNA (1560bp) protein (520aa)
Phospholipase D domain protein {ECO:0000313|EMBL:EEG75645.1}; EC=3.1.-.- {ECO:0000313|EMBL:EEG75645.1};; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes (EC:2.7.8.-)
Phospholipase D domain protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BX47_9CLOT
L1_007_122G1_scaffold_159_28
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26513..26824
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BX48_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG75646.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
L1_007_122G1_scaffold_159_29
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26977..29088
DNA (2112bp) protein (704aa)
isoamylase (EC:3.2.1.-)
Glycogen debranching enzyme GlgX n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C4E5_9FIRM
Glycogen debranching enzyme GlgX {ECO:0000313|EMBL:ETD21900.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L1_007_122G1_scaffold_159_30
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29129..29998)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RP39_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC50668.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
radical SAM protein
Displaying items 1-30 of 77 in total

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