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L1_007_122G1_scaffold_197

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_197_1
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(155..1837)
DNA (1683bp) protein (561aa)
acyl-coenzyme A synthetase ACSM3 (EC:6.2.1.2)
Acyl-coenzyme A synthetase ACSM3 n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6ISV0_9FIRM
Acyl-coenzyme A synthetase ACSM3 {ECO:0000313|EMBL:CDB41057.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L1_007_122G1_scaffold_197_2
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1858..2406)
DNA (549bp) protein (183aa)
Cupin domain protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I6P5_9FIRM
Cupin domain protein {ECO:0000313|EMBL:CDB41056.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
XRE family transcriptional regulator
L1_007_122G1_scaffold_197_3
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2639..3220)
DNA (582bp) protein (194aa)
metal dependent phosphohydrolase (EC:3.1.3.5)
HD domain protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I0P8_9FIRM
HD domain protein {ECO:0000313|EMBL:CDB42870.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L1_007_122G1_scaffold_197_4
Clostridium sp. CAG:264, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3262..5019)
DNA (1758bp) protein (586aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1262786 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:264.;"
Pyruvate kinase n=1 Tax=Clostridium sp. CAG:264 RepID=R5K1Z4_9CLOT
pyruvate kinase
L1_007_122G1_scaffold_197_5
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5679..6269
DNA (591bp) protein (197aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
SOS-response transcriptional repressor, LexA (EC:3.4.21.88)
LexA repressor n=2 Tax=root RepID=R5MNG5_9FIRM
L1_007_122G1_scaffold_197_6
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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6434..7021
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KE22_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN36894.2}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L1_007_122G1_scaffold_197_7
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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7038..7247
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KE21_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN36893.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
L1_007_122G1_scaffold_197_8
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7256..7588
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Clostridium tunisiense RepID=UPI00030A0FF0
Uncharacterized protein {ECO:0000313|EMBL:EGN36893.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
L1_007_122G1_scaffold_197_9
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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7755..9212
DNA (1458bp) protein (486aa)
Uncharacterized protein n=2 Tax=Enterococcus RepID=T2NLL1_ENTFC
Uncharacterized protein {ECO:0000313|EMBL:EPH61868.1}; TaxID=1259824 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium 13.SD.W.09.;"
hypothetical protein
L1_007_122G1_scaffold_197_10
Anaerotruncus sp. CAG:528, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9281..10294
DNA (1014bp) protein (338aa)
Glycoside hydrolase family 43 n=1 Tax=Anaerotruncus sp. CAG:528 RepID=R5XB21_9FIRM
Glycoside hydrolase family 43 {ECO:0000313|EMBL:CDA12010.1}; TaxID=1262700 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:528.;"
Glycosyl hydrolases family 43.
L1_007_122G1_scaffold_197_11
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10326..12752)
DNA (2427bp) protein (809aa)
nagZ; beta-n-acetylhexosaminidase NagZ (EC:3.2.1.52)
F5/8 type C domain protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CQI6_9FIRM
F5/8 type C domain protein {ECO:0000313|EMBL:EDY32413.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L1_007_122G1_scaffold_197_12
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12994..15528)
DNA (2535bp) protein (845aa)
FtsX-like permease family protein n=1 Tax=Clostridium difficile CD104 RepID=T3AT47_CLODI
ABC transporter permease
Uncharacterized protein {ECO:0000313|EMBL:EGG86821.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
L1_007_122G1_scaffold_197_13
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15525..16202)
DNA (678bp) protein (226aa)
ABC-type antimicrobial peptide transport system, ATPase component n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LYM5_CLOCD
antimicrobial peptide ABC transporter ATPase
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:AEV70013.1}; Flags: Precursor;; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
L1_007_122G1_scaffold_197_14
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16429..17136
DNA (708bp) protein (236aa)
ThiF family protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I444_9FIRM
ThiF family protein {ECO:0000313|EMBL:CDB41269.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
UBA/THIF-type NAD/FAD-binding protein
L1_007_122G1_scaffold_197_15
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17260..18309
DNA (1050bp) protein (350aa)
dapB2; dihydrodipicolinate reductase DapB2 (EC:1.3.1.26)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6KM89_9CLOT
Dihydrodipicolinate reductase {ECO:0000313|EMBL:ENZ60966.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
L1_007_122G1_scaffold_197_16
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18540..19664
DNA (1125bp) protein (375aa)
Putative coproporphyrinogen dehydrogenase n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DUR5_9FIRM
Putative coproporphyrinogen dehydrogenase {ECO:0000313|EMBL:CDA92228.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
oxygen-independent coproporphyrinogen III oxidase
L1_007_122G1_scaffold_197_17
Paenibacillus durus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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19771..20979
DNA (1209bp) protein (403aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9WZG1_9CLOT
MFS transporter {ECO:0000313|EMBL:AKG36680.1}; TaxID=1333534 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus durus ATCC 35681.;"
transporter, putative fucose permease
L1_007_122G1_scaffold_197_18
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21099..22637)
DNA (1539bp) protein (513aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Clostridium leptum CAG:27 RepID=R6MZT3_9CLOT
gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
L1_007_122G1_scaffold_197_19
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22710..23477)
DNA (768bp) protein (256aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
tpiA; Triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=1 Tax=Clostridium sp. CAG:678 RepID=R5L068_9CLOT
L1_007_122G1_scaffold_197_20
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23574..24764)
DNA (1191bp) protein (397aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
pgk; Phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5YCG7_9FIRM
L1_007_122G1_scaffold_197_21
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24997..27186)
DNA (2190bp) protein (730aa)
Ser/Thr phosphatase family protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NGV9_CLOSV
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:EDS06143.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
metallophosphoesterase
L1_007_122G1_scaffold_197_22
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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27497..30265
DNA (2769bp) protein (923aa)
Protein translocase subunit SecA n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DUS4_9FIRM
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
secA; Protein translocase subunit SecA
L1_007_122G1_scaffold_197_23
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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30681..31490
DNA (810bp) protein (270aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RSV5_9FIRM
MerR family transcriptional regulator {ECO:0000313|EMBL:KJF40298.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
MerR family transcriptional regulator
L1_007_122G1_scaffold_197_24
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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31487..32302
DNA (816bp) protein (272aa)
sulfate-transporting ATPase (EC:3.6.3.25)
Sulfate-transporting ATPase {ECO:0000313|EMBL:ADZ85643.1}; EC=3.6.3.25 {ECO:0000313|EMBL:ADZ85643.1};; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
Sulfate-transporting ATPase n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JKC8_CELLD
L1_007_122G1_scaffold_197_25
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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32299..33018
DNA (720bp) protein (240aa)
ABC-2 type transporter n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JKC7_CELLD
ABC transporter
ABC-2 type transporter {ECO:0000313|EMBL:ADZ85642.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L1_007_122G1_scaffold_197_26
Blautia hydrogenotrophica, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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33526..34830
DNA (1305bp) protein (435aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=476272 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hydrogenotrophica DSM 10507.;"
Phosphomethylpyrimidine synthase n=2 Tax=Blautia RepID=C0CNM2_9FIRM
hypothetical protein
L1_007_122G1_scaffold_197_27
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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34848..35666
DNA (819bp) protein (273aa)
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030};; 4-methyl-5-beta-hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
hydroxyethylthiazole kinase (EC:2.7.1.50)
Hydroxyethylthiazole kinase n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZJK5_9FIRM
L1_007_122G1_scaffold_197_28
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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35653..36300
DNA (648bp) protein (216aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
thiamine-phosphate diphosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase n=2 Tax=Clostridiales RepID=B0NKE1_CLOSV
L1_007_122G1_scaffold_197_29
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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36332..36982
DNA (651bp) protein (217aa)
HAD hydrolase, family IA n=1 Tax=Oscillibacter sp. 1-3 RepID=R9LWG1_9FIRM
HAD hydrolase, family IA {ECO:0000313|EMBL:EOS62853.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
L1_007_122G1_scaffold_197_30
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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36979..37764
DNA (786bp) protein (262aa)
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:EEG28650.1}; EC=2.7.4.7 {ECO:0000313|EMBL:EEG28650.1};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIR3_9CLOT
Displaying items 1-30 of 56 in total

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