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L1_007_122G1_scaffold_200

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_200_1
unknown

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1..168
DNA (168bp) protein (56aa)

This feature has no annotations

L1_007_122G1_scaffold_200_2
unknown

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239..523
DNA (285bp) protein (95aa)

This feature has no annotations

L1_007_122G1_scaffold_200_3
unknown

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555..935
DNA (381bp) protein (127aa)

This feature has no annotations

L1_007_122G1_scaffold_200_4
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1128..1805
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5YQM7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA18902.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_007_122G1_scaffold_200_5
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1802..3370
DNA (1569bp) protein (523aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
ssrB; sensor signal transduction histidine kinase SsrB (EC:2.7.13.3)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Eubacterium sp. CAG:180 RepID=R5N087_9FIRM
L1_007_122G1_scaffold_200_6
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3405..3935
DNA (531bp) protein (177aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BBA0_9CLOT
2'-5' RNA ligase
L1_007_122G1_scaffold_200_7
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4206..4718)
DNA (513bp) protein (171aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
aroK; shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NQG6_9FIRM
L1_007_122G1_scaffold_200_8
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4865..5812)
DNA (948bp) protein (316aa)
Transketolase, C-terminal subunit (EC:2.2.1.1)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IWT3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB42437.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L1_007_122G1_scaffold_200_9
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5814..6659)
DNA (846bp) protein (282aa)
Transketolase, N-terminal subunit (EC:2.2.1.1)
Transketolase thiamine diphosphate binding domain protein n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5Y3F3_9FIRM
Transketolase thiamine diphosphate binding domain protein {ECO:0000313|EMBL:CDA89928.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
L1_007_122G1_scaffold_200_10
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6919..7776)
DNA (858bp) protein (286aa)
HAD hydrolase family IIB n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I7H2_9FIRM
HAD hydrolase family IIB {ECO:0000313|EMBL:CDB42439.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
HAD-superfamily hydrolase
L1_007_122G1_scaffold_200_11
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7757..8692)
DNA (936bp) protein (312aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
ylyB; putative RNA pseudouridine synthase YlyB (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Clostridium sp. MSTE9 RepID=J1H8S3_9CLOT
L1_007_122G1_scaffold_200_12
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8685..9245)
DNA (561bp) protein (187aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
Lipoprotein signal peptidase n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MZW9_9FIRM
lipoprotein signal peptidase
L1_007_122G1_scaffold_200_13
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9375..10460)
DNA (1086bp) protein (362aa)
DivIVA n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IWT8_9FIRM
DivIVA {ECO:0000313|EMBL:CDB42442.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
DivIVA domain
L1_007_122G1_scaffold_200_14
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10503..10982)
DNA (480bp) protein (160aa)
Cell division protein SepF n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PDZ4_9FIRM
Cell division protein SepF {ECO:0000256|HAMAP-Rule:MF_01197}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L1_007_122G1_scaffold_200_15
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11004..11729)
DNA (726bp) protein (242aa)
Pyridoxal phosphate enzyme YggS family n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5Y3F8_9FIRM
Pyridoxal phosphate enzyme YggS family {ECO:0000313|EMBL:CDA19349.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
pyridoxal phosphate enzyme, YggS family
L1_007_122G1_scaffold_200_16
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11707..13065)
DNA (1359bp) protein (453aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MZU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY90492.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
hypothetical protein
L1_007_122G1_scaffold_200_17
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13062..14021)
DNA (960bp) protein (320aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
tRNA isopentenyltransferase (miaA) (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EF22_9CLOT
L1_007_122G1_scaffold_200_18
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14117..16084)
DNA (1968bp) protein (656aa)
DNA mismatch repair protein MutL n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DZB7_9FIRM
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
DNA mismatch repair protein MutL
L1_007_122G1_scaffold_200_19
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16144..17646)
DNA (1503bp) protein (501aa)
guaB1; inosine-5'-monophosphate dehydrogenase GuaB1 (EC:1.1.1.205)
Inosine 5-monophosphate dehydrogenase n=4 Tax=Clostridium RepID=E9SNS9_CLOSY
Inosine 5-monophosphate dehydrogenase {ECO:0000313|EMBL:ERI76917.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
L1_007_122G1_scaffold_200_20
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17693..20326)
DNA (2634bp) protein (878aa)
DNA mismatch repair protein MutS n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5XW57_9FIRM
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
DNA mismatch repair protein MutS
L1_007_122G1_scaffold_200_21
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20455..20862)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MG58_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY90488.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
Protein of unknown function (DUF964).
L1_007_122G1_scaffold_200_22
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21063..22475)
DNA (1413bp) protein (471aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
miaB; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB (EC:2.-.-.-)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6EGA2_9FIRM
L1_007_122G1_scaffold_200_23
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22665..23708)
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K314_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN37882.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L1_007_122G1_scaffold_200_24
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(23740..24390)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Enterococcus faecium 10/96A RepID=U7TWA3_ENTFC
Uncharacterized protein {ECO:0000313|EMBL:ERT48197.1}; TaxID=1391465 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium 10/96A.;"
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
L1_007_122G1_scaffold_200_25
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24514..25455)
DNA (942bp) protein (314aa)
Putative uncharacterized protein n=2 Tax=Clostridium cellulovorans RepID=D9SNU9_CLOC7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL49970.1}; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /; 743B).;"
L1_007_122G1_scaffold_200_26
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25537..26376)
DNA (840bp) protein (280aa)
Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I3L9_CLOCE
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACL76362.1}; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
L1_007_122G1_scaffold_200_27
BJP_IG2158_Thermincola_46_17, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26577..26897)
DNA (321bp) protein (107aa)
LPBCA THIOREDOXIN n=1 Tax=synthetic construct RepID=UPI0002638C92
thioredoxin
Tax=BJP_IG2158_Thermincola_46_17
L1_007_122G1_scaffold_200_28
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26922..27530)
DNA (609bp) protein (203aa)
Iron-sulfur flavoprotein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QMU3_9CLOT
Iron-sulfur flavoprotein {ECO:0000313|EMBL:CDC37075.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
putative NADPH-dependent fmn reductase
L1_007_122G1_scaffold_200_29
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27493..28569)
DNA (1077bp) protein (359aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
pyrB; Aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MGJ0_9FIRM
L1_007_122G1_scaffold_200_30
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29102..30097
DNA (996bp) protein (332aa)
Cell envelope-related function transcriptional attenuator common domain n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IWR5_9FIRM
Cell envelope-related function transcriptional attenuator common domain {ECO:0000313|EMBL:CDB42422.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
Displaying items 1-30 of 61 in total

View Taxonomy