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L1_007_122G1_scaffold_238

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_238_1
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..1792
DNA (1791bp) protein (597aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5L2F0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY67227.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
hypothetical protein
L1_007_122G1_scaffold_238_2
Faecalibacterium sp. CAG:1138, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2219..3661
DNA (1443bp) protein (481aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:1138 RepID=R5FU22_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY03671.1}; TaxID=1262896 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:1138.;"
sugar transporter
L1_007_122G1_scaffold_238_3
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3712..5874
DNA (2163bp) protein (721aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NTI8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC11714.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
glycoside hydrolase family protein
L1_007_122G1_scaffold_238_4
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6144..7400
DNA (1257bp) protein (419aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6ITC1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41252.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L1_007_122G1_scaffold_238_5
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7546..8889
DNA (1344bp) protein (448aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase n=1 Tax=Clostridium leptum CAG:27 RepID=R6MWF6_9CLOT
L1_007_122G1_scaffold_238_6
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8944..9360
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:180 RepID=R5N702_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY92952.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
hypothetical protein
L1_007_122G1_scaffold_238_7
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9791..10285
DNA (495bp) protein (165aa)
Putative ACR COG1399 n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IXG8_9FIRM
Putative ACR COG1399 {ECO:0000313|EMBL:CDB42697.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Predicted metal-binding, possibly nucleic acid-binding protein
L1_007_122G1_scaffold_238_8
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10327..10509
DNA (183bp) protein (61aa)
50S ribosomal protein L32 n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IB95_9FIRM
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L1_007_122G1_scaffold_238_9
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10639..11958
DNA (1320bp) protein (440aa)
Putative FeS-containing Cyanobacterial-specific oxidoreductase n=1 Tax=Clostridium leptum CAG:27 RepID=R6P251_9CLOT
Putative FeS-containing Cyanobacterial-specific oxidoreductase {ECO:0000313|EMBL:CDC04022.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
L1_007_122G1_scaffold_238_10
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11995..13320
DNA (1326bp) protein (442aa)
GTPase Der n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6E4L4_9FIRM
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
engA; GTP-binding protein EngA
L1_007_122G1_scaffold_238_11
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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comp(13440..14162)
DNA (723bp) protein (241aa)
Response regulator receiver domain protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RAV1_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:CDC42439.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_007_122G1_scaffold_238_12
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14155..16851)
DNA (2697bp) protein (899aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
Osmosensitive K+ channel histidine kinase (EC:2.7.13.3)
Putative histidine kinase KdpD n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2F3E2_CLOS4
L1_007_122G1_scaffold_238_13
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17246..18127)
DNA (882bp) protein (294aa)
UPI0003071751 related cluster n=1 Tax=unknown RepID=UPI0003071751
Uncharacterized protein {ECO:0000313|EMBL:EES50326.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
L1_007_122G1_scaffold_238_14
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18217..18822)
DNA (606bp) protein (202aa)
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
kdpC; high affinity K+-transporting ATPase subunit C (EC:3.6.3.12)
Potassium-transporting ATPase C chain n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LC07_9FIRM
L1_007_122G1_scaffold_238_15
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18865..20934)
DNA (2070bp) protein (690aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
kdpB; high affinity K+-transporting ATPase subunit B (EC:3.6.3.12)
Potassium-transporting ATPase B chain n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRV8_9FIRM
L1_007_122G1_scaffold_238_16
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20947..22758)
DNA (1812bp) protein (604aa)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
kdpA; high affinity K+-transporting ATPase subunit A (EC:3.6.3.12)
Potassium-transporting ATPase A chain n=1 Tax=Clostridium sp. CAG:352 RepID=R6QPM4_9CLOT
L1_007_122G1_scaffold_238_17
unknown

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comp(22755..22847)
DNA (93bp) protein (31aa)

This feature has no annotations

L1_007_122G1_scaffold_238_18
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22954..23148)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6R009_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC38539.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
L1_007_122G1_scaffold_238_19
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23568..24677
DNA (1110bp) protein (370aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
potA; spermidine/putrescine ABC transporter ATP-binding protein (EC:3.6.3.31)
TOBE domain protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6PRD1_9CLOT
L1_007_122G1_scaffold_238_20
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24681..25508
DNA (828bp) protein (276aa)
Uncharacterized protein n=2 Tax=root RepID=R5MEJ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY89963.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
ABC-type spermidine/putrescine transport system, permease component I
L1_007_122G1_scaffold_238_21
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25589..26416
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NVC9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC12359.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
binding-protein-dependent transport system inner membrane protein
L1_007_122G1_scaffold_238_22
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26413..27642
DNA (1230bp) protein (410aa)
Extracellular solute-binding protein family 1 n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5XXM9_9FIRM
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:CDA19913.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
spermidine/putrescine transport ATP-binding protein PotD
L1_007_122G1_scaffold_238_23
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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27679..28275
DNA (597bp) protein (199aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I4K7_9FIRM
peptidyl-prolyl cis-trans isomerase
L1_007_122G1_scaffold_238_24
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

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28920..29273
DNA (354bp) protein (118aa)
methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Butyrivibrio sp. AD3002 RepID=UPI0003B35071
Methylated-DNA-[protein]-cysteine S-methyltransferase {ECO:0000313|EMBL:EOQ38609.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
methylated-DNA--protein-cysteine methyltransferase
L1_007_122G1_scaffold_238_25
Clostridium ljungdahlii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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29309..29860
DNA (552bp) protein (184aa)
Nitroreductase n=2 Tax=Clostridium RepID=U5RNJ9_9CLOT
NAD(P)H nitroreductase
Putative NAD(P)H nitroreductase {ECO:0000313|EMBL:ADK15062.1}; TaxID=748727 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC).;"
L1_007_122G1_scaffold_238_26
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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30346..31287
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6PLU7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC10722.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
hypothetical protein
L1_007_122G1_scaffold_238_27
unknown

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31398..31964
DNA (567bp) protein (189aa)

This feature has no annotations

L1_007_122G1_scaffold_238_28
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(32362..33327)
DNA (966bp) protein (322aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
pseudouridine synthase, RluA family (EC:5.4.99.12)
Pseudouridine synthase RluA family n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DXV0_9FIRM
L1_007_122G1_scaffold_238_29
unknown

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33689..33781
DNA (93bp) protein (31aa)

This feature has no annotations

L1_007_122G1_scaffold_238_30
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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33774..34466
DNA (693bp) protein (231aa)
Putative DNA repair protein radC n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5ETG6_9FIRM
Putative DNA repair protein radC {ECO:0000313|EMBL:CCX91892.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
DNA repair protein RadC
Displaying items 1-30 of 59 in total

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