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L1_007_122G1_scaffold_244

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Displaying items 1-30 of 94 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_244_1
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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106..1284
DNA (1179bp) protein (393aa)
Cell wall-associated hydrolases (Invasion-associated proteins) n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DJL1_CLOSC
Hydrolase Nlp/P60 {ECO:0000313|EMBL:KJF41596.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Cell wall-associated hydrolases (invasion-associated proteins)
L1_007_122G1_scaffold_244_2
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1296..1553
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Clostridium difficile RepID=UPI0001B44E8B
Uncharacterized protein {ECO:0000313|EMBL:KJF41508.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L1_007_122G1_scaffold_244_3
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1550..2290
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6GYR4_9FIRM
Bacteriocin {ECO:0000313|EMBL:KJF41509.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L1_007_122G1_scaffold_244_4
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2287..2463
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YRF2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM49414.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
hypothetical protein
L1_007_122G1_scaffold_244_5
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2468..2821
DNA (354bp) protein (118aa)
Cysteine-rich VLP family protein n=3 Tax=Clostridium difficile RepID=T3FV20_CLODI
Uncharacterized protein {ECO:0000313|EMBL:KJF41510.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L1_007_122G1_scaffold_244_6
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3008..3187
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2BTY9_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:ERI75268.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
hypothetical protein
L1_007_122G1_scaffold_244_7
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3184..3531
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6H6W2_9FIRM
Mobilization protein {ECO:0000313|EMBL:KJF41511.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L1_007_122G1_scaffold_244_8
unknown

Not on your lists

3688..4551
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium 21_3 RepID=H1B249_9FIRM
L1_007_122G1_scaffold_244_9
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4701..4988
DNA (288bp) protein (96aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R6D4S2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJF41513.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L1_007_122G1_scaffold_244_10
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5082..7094)
DNA (2013bp) protein (671aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q190_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK49769.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L1_007_122G1_scaffold_244_11
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7190..8680
DNA (1491bp) protein (497aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:511 RepID=R7PPP6_9CLOT
RLX protein {ECO:0000313|EMBL:KJF41515.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Relaxase/mobilization nuclease family protein
L1_007_122G1_scaffold_244_12
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8867..9223)
DNA (357bp) protein (119aa)
DNA-binding helix-turn-helix protein n=1 Tax=Bifidobacterium longum subsp. longum 1-6B RepID=I3B9R4_BIFLN
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEG93176.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Predicted transcriptional regulators
L1_007_122G1_scaffold_244_13
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

9410..10465
DNA (1056bp) protein (352aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=N1ZQT2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13033.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
DNA-binding protein
L1_007_122G1_scaffold_244_14
Eubacterium plexicaudatum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10468..11313
DNA (846bp) protein (282aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=N1ZYY3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EMZ19363.1}; TaxID=1235802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium plexicaudatum ASF492.;"
peptidase M23
L1_007_122G1_scaffold_244_15
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11799..12221
DNA (423bp) protein (141aa)
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DJJ8_CLOSC
RNA polymerase sigma24 factor {ECO:0000313|EMBL:KJF41518.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
L1_007_122G1_scaffold_244_16
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12552..12752
DNA (201bp) protein (67aa)
hypothetical protein n=1 Tax=Clostridium difficile RepID=UPI00016C64F8
Uncharacterized protein {ECO:0000313|EMBL:KJF41598.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L1_007_122G1_scaffold_244_17
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12888..13034
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NWM0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM99556.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L1_007_122G1_scaffold_244_18
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13127..14833
DNA (1707bp) protein (569aa)
Resolvase, N-terminal domain protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NWM1_9FIRM
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EDM99558.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
putative site-specific recombinase
L1_007_122G1_scaffold_244_19
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15015..15500)
DNA (486bp) protein (162aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYN6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64560.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
regulatory protein
L1_007_122G1_scaffold_244_20
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15645..17402)
DNA (1758bp) protein (586aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYN7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64561.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
myosin-cross-reactive antigen
L1_007_122G1_scaffold_244_21
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17566..17814
DNA (249bp) protein (83aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYN8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64562.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L1_007_122G1_scaffold_244_22
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17864..18442)
DNA (579bp) protein (193aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYN9_9FIRM
TetR family transcriptional regulator {ECO:0000313|EMBL:KJF41520.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
TetR family transcriptional regulator
L1_007_122G1_scaffold_244_23
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18644..19282
DNA (639bp) protein (213aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYP0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64564.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L1_007_122G1_scaffold_244_24
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19369..20280)
DNA (912bp) protein (304aa)
L-asparaginase, type I n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D3X5_9CLOT
Asparaginase {ECO:0000313|EMBL:KEZ91254.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
type I L-asparaginase
L1_007_122G1_scaffold_244_25
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21098..21973)
DNA (876bp) protein (292aa)
33 kDa chaperonin n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYP2_9FIRM
33 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00117, ECO:0000256|SAAS:SAAS00038673}; Heat shock protein 33 homolog {ECO:0000256|HAMAP-Rule:MF_00117}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Disulfide bond chaperones of the HSP33 family
L1_007_122G1_scaffold_244_26
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21970..22725)
DNA (756bp) protein (252aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYP3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64567.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Methylase involved in ubiquinone/menaquinone biosynthesis
L1_007_122G1_scaffold_244_27
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22725..24020)
DNA (1296bp) protein (432aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYP4_9FIRM
L1_007_122G1_scaffold_244_28
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24027..24614)
DNA (588bp) protein (196aa)
Probable GTP-binding protein EngB n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYP5_9FIRM
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
ribosome biogenesis GTP-binding protein YsxC/EngB
L1_007_122G1_scaffold_244_29
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24625..27081)
DNA (2457bp) protein (819aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
ATP-dependent proteinase. Serine peptidase. MEROPS family S16 (EC:3.4.21.53)
Lon protease n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYP6_9FIRM
L1_007_122G1_scaffold_244_30
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27248..28558)
DNA (1311bp) protein (437aa)
ATP-dependent Clp protease ATP-binding subunit ClpX (EC:3.4.21.92)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYP7_9FIRM
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Displaying items 1-30 of 94 in total

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