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L1_007_122G1_scaffold_317

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_317_1
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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404..2179
DNA (1776bp) protein (592aa)
aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartate--tRNA ligase n=2 Tax=root RepID=R5MX40_9FIRM
Aspartate--tRNA ligase 1 {ECO:0000313|EMBL:CCY89921.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
L1_007_122G1_scaffold_317_2
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2226..2513
DNA (288bp) protein (96aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit (EC:6.3.5.6 6.3.5.7)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MEF1_9FIRM
L1_007_122G1_scaffold_317_3
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2552..4018
DNA (1467bp) protein (489aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A (EC:6.3.5.- 6.3.5.6 6.3.5.7)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=3 Tax=root RepID=R5ME06_9FIRM
L1_007_122G1_scaffold_317_4
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4137..5567
DNA (1431bp) protein (477aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.6 6.3.5.7 6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=3 Tax=root RepID=R5ME11_9FIRM
L1_007_122G1_scaffold_317_5
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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5945..6559
DNA (615bp) protein (205aa)
acetyltransferase, GNAT family (EC:2.3.1.-)
Uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MDW6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDR98136.1}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
L1_007_122G1_scaffold_317_6
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6907..7956
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NJH0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC12308.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
cbpE; choline binding protein E
L1_007_122G1_scaffold_317_7
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8197..8685
DNA (489bp) protein (163aa)
Ribosome maturation factor RimP n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IBU6_9FIRM
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L1_007_122G1_scaffold_317_8
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8841..9923
DNA (1083bp) protein (361aa)
Transcription termination factor NusA n=3 Tax=root RepID=R5MK70_9FIRM
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
transcription termination factor NusA
L1_007_122G1_scaffold_317_9
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9956..10228
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5YSP5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA19622.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
hypothetical protein
L1_007_122G1_scaffold_317_10
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10269..10592
DNA (324bp) protein (108aa)
Ribosomal protein L7Ae n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HYA2_9FIRM
Ribosomal protein L7Ae {ECO:0000313|EMBL:CDB42878.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
ribosomal protein L7Ae/L30e/S12e/Gadd45
L1_007_122G1_scaffold_317_11
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10579..12993
DNA (2415bp) protein (805aa)
Translation initiation factor IF-2 n=1 Tax=Clostridium sp. CAG:413 RepID=R6PLV5_9CLOT
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
translation initiation factor IF-2
L1_007_122G1_scaffold_317_12
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13039..13398
DNA (360bp) protein (120aa)
Ribosome-binding factor A n=1 Tax=Clostridium sp. CAG:413 RepID=R6NF00_9CLOT
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
ribosome-binding factor A
L1_007_122G1_scaffold_317_13
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13388..14341
DNA (954bp) protein (318aa)
DHHA1 domain protein n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5XWW4_9FIRM
DHHA1 domain protein {ECO:0000313|EMBL:CDA19618.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
phosphoesterase RecJ domain-containing protein
L1_007_122G1_scaffold_317_14
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14342..15241
DNA (900bp) protein (300aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
truB; tRNA pseudouridine synthase B (EC:5.4.99.25)
tRNA pseudouridine synthase B n=1 Tax=Clostridium sp. CAG:678 RepID=R5L5A0_9CLOT
L1_007_122G1_scaffold_317_15
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15277..16209
DNA (933bp) protein (311aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
ribF; riboflavin biosynthesis protein RibF (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein RibF n=2 Tax=root RepID=R5MXM5_9FIRM
L1_007_122G1_scaffold_317_16
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16202..16888
DNA (687bp) protein (229aa)
HAD hydrolase family IA variant 1 n=1 Tax=Clostridium sp. CAG:217 RepID=R6IYV5_9CLOT
HAD hydrolase family IA variant 1 {ECO:0000313|EMBL:CDB51624.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
hydrolase
L1_007_122G1_scaffold_317_17
Clostridium ljungdahlii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17059..17838
DNA (780bp) protein (260aa)
Putative uncharacterized protein n=1 Tax=Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC) RepID=D8GU80_CLOLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADK14743.1}; TaxID=748727 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC).;"
L1_007_122G1_scaffold_317_18
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18017..18280
DNA (264bp) protein (88aa)
30S ribosomal protein S15 n=2 Tax=environmental samples RepID=R5YE01_9FIRM
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
SSU ribosomal protein S15P
L1_007_122G1_scaffold_317_19
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18490..20703
DNA (2214bp) protein (738aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I4H6_9FIRM
L1_007_122G1_scaffold_317_20
Paenibacillus sp. FSL H8-237, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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21508..22632
DNA (1125bp) protein (375aa)
Peptidase U32 {ECO:0000313|EMBL:ETT49242.1}; TaxID=1227350 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL H8-237.;"
hypothetical protein
Peptidase, U32 superfamily id=4163369 bin=GWC2_Elusimicrobia_64_44 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Elusimicrobia_64_44 organism_group=Elusimicrobia organism_desc=Good
L1_007_122G1_scaffold_317_21
Dialister sp. CAG:357, Dialister, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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22680..23408
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Dialister sp. CAG:357 RepID=R7CRI8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80844.1}; TaxID=1262869 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Dialister; environmental samples.;" source="Dialister sp. CAG:357.;"
hypothetical protein
L1_007_122G1_scaffold_317_22
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23401..24402
DNA (1002bp) protein (334aa)
Electron transfer flavoprotein, alpha subunit/FixB family protein n=4 Tax=Clostridium botulinum RepID=C1FVK9_CLOBJ
electron transfer flavoprotein subunit alpha/FixB family protein
Electron transfer flavoprotein, alpha subunit/FixB family protein {ECO:0000313|EMBL:ACO83589.1}; TaxID=536232 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Kyoto / Type A2).;"
L1_007_122G1_scaffold_317_23
Paenibacillus odorifer, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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24404..25090
DNA (687bp) protein (229aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIQ73831.1}; TaxID=189426 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus odorifer.;"
L1_007_122G1_scaffold_317_24
unknown

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25308..25796
DNA (489bp) protein (163aa)

This feature has no annotations

L1_007_122G1_scaffold_317_25
Paenibacillus odorifer, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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25809..27242
DNA (1434bp) protein (478aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II n=1 Tax=Brevibacillus sp. BC25 RepID=J2GQ80_9BACL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIQ73837.1}; TaxID=189426 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus odorifer.;"
L1_007_122G1_scaffold_317_26
Paenibacillus sp. FSL H8-237, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

27239..28147
DNA (909bp) protein (303aa)
hypothetical protein
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ETT49240.1}; TaxID=1227350 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL H8-237.;"
L1_007_122G1_scaffold_317_27
Paenibacillus sp. FSL H8-237, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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28129..29295
DNA (1167bp) protein (389aa)
Putative glycosyl transferase n=1 Tax=Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC) RepID=D8GSQ7_CLOLD
Glycosyl transferase family protein {ECO:0000313|EMBL:ETT49241.1}; TaxID=1227350 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL H8-237.;"
hypothetical protein
L1_007_122G1_scaffold_317_28
Pseudomonas sp., Proteobacteria, Bacteria

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29313..29564
DNA (252bp) protein (84aa)
Uncharacterized protein; TaxID=306 species="Bacteria; Proteobacteria.;" source="Pseudomonas sp.;"
L1_007_122G1_scaffold_317_29
unknown

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29608..31305
DNA (1698bp) protein (566aa)
hypothetical protein
L1_007_122G1_scaffold_317_30
Paenibacillus sp. FSL H8-237, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

31295..32434
DNA (1140bp) protein (380aa)
rrs:RoseRS_3808 FAD dependent oxidoreductase; K00303 sarcosine oxidase, subunit beta [EC:1.5.3.1] id=1247040 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
FAD dependent oxidoreductase {ECO:0000313|EMBL:ETT49252.1}; TaxID=1227350 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL H8-237.;"
Displaying items 1-30 of 40 in total

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