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L1_007_122G1_scaffold_363

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_363_1
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2..211)
DNA (210bp) protein (70aa)
50S ribosomal protein L6 n=2 Tax=root RepID=R5N267_9FIRM
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
50S ribosomal protein L6
L1_007_122G1_scaffold_363_2
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(228..626)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Clostridium sp. CAG:413 RepID=R6NTG7_9CLOT
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
30S ribosomal protein S8
L1_007_122G1_scaffold_363_3
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(852..1391)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6E6F6_9FIRM
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
Ribosomal protein L5
L1_007_122G1_scaffold_363_4
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1409..1738)
DNA (330bp) protein (110aa)
50S ribosomal protein L24 n=1 Tax=Clostridium sp. CAG:413 RepID=R6NHS8_9CLOT
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
rplX; ribosomal protein L24
L1_007_122G1_scaffold_363_5
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1755..2123)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I468_9FIRM
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
LSU ribosomal protein L14P
L1_007_122G1_scaffold_363_6
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2153..2410)
DNA (258bp) protein (86aa)
30S ribosomal protein S17 n=2 Tax=root RepID=R5MNL5_9FIRM
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
30S ribosomal protein S17
L1_007_122G1_scaffold_363_7
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2429..2632)
DNA (204bp) protein (68aa)
50S ribosomal protein L29 n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6ITG6_9FIRM
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L1_007_122G1_scaffold_363_8
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2632..3057)
DNA (426bp) protein (142aa)
50S ribosomal protein L16 n=1 Tax=Clostridium sp. CAG:413 RepID=R6NHS4_9CLOT
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
LSU ribosomal protein L16P
L1_007_122G1_scaffold_363_9
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3057..3728)
DNA (672bp) protein (224aa)
30S ribosomal protein S3 n=1 Tax=Clostridium sp. CAG:413 RepID=R6NZH5_9CLOT
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
rpsC; 30S ribosomal protein S3
L1_007_122G1_scaffold_363_10
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3748..4083)
DNA (336bp) protein (112aa)
50S ribosomal protein L22 n=1 Tax=Clostridium sp. CAG:413 RepID=R6NKE5_9CLOT
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
50S ribosomal protein L22
L1_007_122G1_scaffold_363_11
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4107..4385)
DNA (279bp) protein (93aa)
30S ribosomal protein S19 n=1 Tax=Clostridium sp. CAG:413 RepID=R6NTG2_9CLOT
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
30S ribosomal protein S19
L1_007_122G1_scaffold_363_12
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4409..5278)
DNA (870bp) protein (290aa)
50S ribosomal protein L2 n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6ITG0_9FIRM
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
LSU ribosomal protein L2P
L1_007_122G1_scaffold_363_13
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5324..5620)
DNA (297bp) protein (99aa)
50S ribosomal protein L23 n=1 Tax=Clostridium sp. CAG:413 RepID=R6PPH9_9CLOT
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
hypothetical protein
L1_007_122G1_scaffold_363_14
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5617..6240)
DNA (624bp) protein (208aa)
50S ribosomal protein L4 n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HW61_9FIRM
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
rplD; 50S ribosomal protein L4
L1_007_122G1_scaffold_363_15
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6257..6892)
DNA (636bp) protein (212aa)
50S ribosomal protein L3 n=2 Tax=root RepID=R5MNK4_9FIRM
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
rplC; 50S ribosomal protein L3
L1_007_122G1_scaffold_363_16
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6963..7274)
DNA (312bp) protein (104aa)
30S ribosomal protein S10 n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PCW3_9FIRM
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L1_007_122G1_scaffold_363_17
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8732..8947
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LV14_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS62368.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
L1_007_122G1_scaffold_363_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9087..9608)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XHN6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45314.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
helix-turn-helix domain-containing protein
L1_007_122G1_scaffold_363_19
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9756..9971
DNA (216bp) protein (72aa)
DNA-binding helix-turn-helix protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P6Y8_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDS12963.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
L1_007_122G1_scaffold_363_20
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10069..10731
DNA (663bp) protein (221aa)
BRO family, N-terminal domain protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P6Y9_9FIRM
BRO family, N-terminal domain protein {ECO:0000313|EMBL:EDS12964.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
BRO-like protein
L1_007_122G1_scaffold_363_21
unknown

Not on your lists

11098..11475
DNA (378bp) protein (126aa)

This feature has no annotations

L1_007_122G1_scaffold_363_22
unknown

Not on your lists

comp(11492..12082)
DNA (591bp) protein (197aa)

This feature has no annotations

L1_007_122G1_scaffold_363_23
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12210..14183
DNA (1974bp) protein (658aa)
Mu DNA binding, I gamma subdomain protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P6Z0_9FIRM
Mu DNA binding, I gamma subdomain protein {ECO:0000313|EMBL:EDS12965.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
transposase-like Mu
L1_007_122G1_scaffold_363_24
unknown

Not on your lists

14173..14358
DNA (186bp) protein (62aa)

This feature has no annotations

L1_007_122G1_scaffold_363_25
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14351..15295
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XHN1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45309.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative ATPase, transposase-like protein
L1_007_122G1_scaffold_363_26
unknown

Not on your lists

15307..15585
DNA (279bp) protein (93aa)

This feature has no annotations

L1_007_122G1_scaffold_363_27
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15666..16124
DNA (459bp) protein (153aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RTV0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL69492.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
helix-turn-helix domain-containing protein
L1_007_122G1_scaffold_363_28
unknown

Not on your lists

16137..16358
DNA (222bp) protein (74aa)

This feature has no annotations

L1_007_122G1_scaffold_363_29
Paenibacillus macerans, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16375..16551
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Paenibacillus polymyxa M1 RepID=G0VZ18_PAEPO
M1_3115; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFM92988.1}; TaxID=44252 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus macerans (Bacillus macerans).;"
L1_007_122G1_scaffold_363_30
unknown

Not on your lists

16678..16881
DNA (204bp) protein (68aa)

This feature has no annotations

Displaying items 1-30 of 62 in total

View Taxonomy