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L1_007_122G1_scaffold_364

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_364_1
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..172
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. 14-2 RepID=S0JIG2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOT28325.1}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
hypothetical protein
L1_007_122G1_scaffold_364_2
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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330..1904
DNA (1575bp) protein (525aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6R647_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC40674.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
Predicted membrane protein involved in D-alanine export
L1_007_122G1_scaffold_364_3
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1917..3092
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QY04_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC40675.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein
L1_007_122G1_scaffold_364_4
Acholeplasma sp. CAG:878, Acholeplasma, Acholeplasmatales, Mollicutes, Tenericutes, Bacteria

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3261..4295
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Acholeplasma sp. CAG:878 RepID=R5HDJ4_9MOLU
Uncharacterized protein {ECO:0000313|EMBL:CCY27795.1}; TaxID=1262686 species="Bacteria; Tenericutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Acholeplasma; environmental samples.;" source="Acholeplasma sp. CAG:878.;"
hypothetical protein
L1_007_122G1_scaffold_364_5
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4388..5830)
DNA (1443bp) protein (481aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I4I7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41409.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L1_007_122G1_scaffold_364_6
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6370..9936
DNA (3567bp) protein (1189aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
nifJ3; Pyruvate-flavodoxin oxidoreductase (EC:1.2.7.-)
Pyruvate-flavodoxin oxidoreductase n=1 Tax=Clostridium leptum DSM 753 RepID=A7VV50_9CLOT
L1_007_122G1_scaffold_364_7
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10121..10486)
DNA (366bp) protein (122aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNJ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75434.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Predicted transcriptional regulators
L1_007_122G1_scaffold_364_8
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11126..11470
DNA (345bp) protein (115aa)
50S ribosomal protein L19 n=1 Tax=Eubacterium sp. CAG:180 RepID=R5N581_9FIRM
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
LSU ribosomal protein L19P
L1_007_122G1_scaffold_364_9
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11533..12105
DNA (573bp) protein (191aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
Signal peptidase I n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MLV0_9FIRM
signal peptidase I
L1_007_122G1_scaffold_364_10
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12156..12761
DNA (606bp) protein (202aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
signal peptidase I (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IV71_9FIRM
L1_007_122G1_scaffold_364_11
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12786..13664
DNA (879bp) protein (293aa)
Ribosome biogenesis GTPase A n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5YCW0_9FIRM
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
rbgA; Ribosome biogenesis GTPase A
L1_007_122G1_scaffold_364_12
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13718..14335
DNA (618bp) protein (206aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
rnhB; Ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I5U4_9FIRM
L1_007_122G1_scaffold_364_13
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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14393..14764
DNA (372bp) protein (124aa)
UPF0102 protein Ethha_0436 n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U8N0_ETHHY
hypothetical protein
UPF0102 protein Ethha_0436 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
L1_007_122G1_scaffold_364_14
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14897..15850
DNA (954bp) protein (318aa)
membrane dipeptidase (EC:3.4.13.19)
Membrane dipeptidase {ECO:0000313|EMBL:CDZ24030.1}; EC=3.4.13.19 {ECO:0000313|EMBL:CDZ24030.1};; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
Membrane dipeptidase n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MLU7_9FIRM
L1_007_122G1_scaffold_364_15
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15922..17427
DNA (1506bp) protein (502aa)
threonine synthase (EC:4.2.3.1)
Threonine synthase n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5XVG2_9FIRM
Threonine synthase {ECO:0000313|EMBL:CDA19063.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
L1_007_122G1_scaffold_364_16
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

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comp(17499..17675)
DNA (177bp) protein (59aa)
Putative uncharacterized protein id=3609341 bin=GWF2_Clostridiales_36_10 species=Ethanoligenens harbinense genus=Ethanoligenens taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
Tax=GWF2_Clostridiales_36_10_curated
L1_007_122G1_scaffold_364_17
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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17861..18577
DNA (717bp) protein (239aa)
Ser/Thr phosphatase family protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I5U0_9FIRM
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:CDB41854.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
metallophosphoesterase
L1_007_122G1_scaffold_364_18
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18739..20088
DNA (1350bp) protein (450aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
Trigger factor n=1 Tax=Eubacterium sp. CAG:180 RepID=R5N573_9FIRM
trigger factor
L1_007_122G1_scaffold_364_19
Eubacterium sp. CAG:581, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20322..20903
DNA (582bp) protein (194aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1262890 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:581.;"
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NP65_9FIRM
L1_007_122G1_scaffold_364_20
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20932..22245
DNA (1314bp) protein (438aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I8T3_9FIRM
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
ATP-dependent Clp protease ATP-binding subunit ClpX
L1_007_122G1_scaffold_364_21
unknown

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comp(22395..22595)
DNA (201bp) protein (67aa)

This feature has no annotations

L1_007_122G1_scaffold_364_22
unknown

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comp(22968..23066)
DNA (99bp) protein (33aa)

This feature has no annotations

L1_007_122G1_scaffold_364_23
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23134..25164
DNA (2031bp) protein (677aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MHZ2_9FIRM
sulfatase family protein
Sulfatase family protein {ECO:0000313|EMBL:AIY84116.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L1_007_122G1_scaffold_364_24
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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25522..26811
DNA (1290bp) protein (430aa)
Chloride transporter, ClC family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P174_9FIRM
Chloride transporter, ClC family {ECO:0000313|EMBL:EDM97766.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Chloride channel protein EriC
L1_007_122G1_scaffold_364_25
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

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26865..27155
DNA (291bp) protein (97aa)
UPF0291 protein BN614_01046 n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BIF5_9FIRM
UPF0291 protein BN614_01046 {ECO:0000256|HAMAP-Rule:MF_01103}; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
hypothetical protein
L1_007_122G1_scaffold_364_26
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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27178..27636
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KDY9_9FIRM
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
rhodanese-like protein
L1_007_122G1_scaffold_364_27
unknown

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comp(27648..27932)
DNA (285bp) protein (95aa)

This feature has no annotations

L1_007_122G1_scaffold_364_28
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28108..28890
DNA (783bp) protein (261aa)
Sugar phosphate isomerases/epimerases n=1 Tax=Clostridium sp. CAG:217 RepID=R6IY34_9CLOT
Sugar phosphate isomerases/epimerases {ECO:0000313|EMBL:CDB51354.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
Sugar phosphate isomerases/epimerases
L1_007_122G1_scaffold_364_29
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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29175..29600
DNA (426bp) protein (142aa)
Transcriptional repressor NrdR n=2 Tax=environmental samples RepID=R5YRY1_9FIRM
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
nrdR; Transcriptional repressor NrdR
L1_007_122G1_scaffold_364_30
unknown

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comp(29803..30648)
DNA (846bp) protein (282aa)

This feature has no annotations

Displaying items 1-30 of 35 in total

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