ggKbase home page

L1_007_122G1_scaffold_391

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_391_1
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(270..3788)
DNA (3519bp) protein (1173aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
Pyruvate-flavodoxin oxidoreductase n=4 Tax=Erysipelotrichaceae RepID=B0N6M9_9FIRM
pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
L1_007_122G1_scaffold_391_2
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(4031..4501)
DNA (471bp) protein (157aa)
Uncharacterized protein n=3 Tax=Erysipelotrichaceae RepID=B0N6M8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM89741.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
L1_007_122G1_scaffold_391_3
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(4498..5397)
DNA (900bp) protein (300aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
UTP--glucose-1-phosphate uridylyltransferase n=4 Tax=Erysipelotrichaceae RepID=B0N6M7_9FIRM
gtaB; UTP--glucose-1-phosphate uridylyltransferase
L1_007_122G1_scaffold_391_4
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(5440..6084)
DNA (645bp) protein (215aa)
Peptidase, S54 family n=3 Tax=Erysipelotrichaceae RepID=B0N6M6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ35242.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
GlpG protein (membrane protein of glp regulon)
L1_007_122G1_scaffold_391_5
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6086..7084)
DNA (999bp) protein (333aa)
Uncharacterized protein n=3 Tax=Coprobacillus RepID=C3RR84_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ35243.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
hypothetical protein
L1_007_122G1_scaffold_391_6
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(7094..8074)
DNA (981bp) protein (327aa)
L-asparaginase, type II n=2 Tax=Erysipelotrichaceae RepID=B0N6M4_9FIRM
L-asparaginase, type II {ECO:0000313|EMBL:EHM89745.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
L-asparaginase, type II
L1_007_122G1_scaffold_391_7
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(8157..10823)
DNA (2667bp) protein (889aa)
pyruvate, phosphate dikinase (EC:2.7.9.1)
Pyruvate, phosphate dikinase n=4 Tax=Erysipelotrichaceae RepID=B0N6M3_9FIRM
Pyruvate, phosphate dikinase {ECO:0000313|EMBL:EHQ44801.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
L1_007_122G1_scaffold_391_8
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(10967..12574)
DNA (1608bp) protein (536aa)
DEAD/DEAH box helicase n=3 Tax=Erysipelotrichaceae RepID=B0N6M2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHQ44800.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
DEAD/DEAH box helicase
L1_007_122G1_scaffold_391_9
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

12753..13133
DNA (381bp) protein (127aa)
Uncharacterized protein n=5 Tax=Erysipelotrichaceae RepID=B0N6M1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS17459.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
Bacterial membrane flanked domain.
L1_007_122G1_scaffold_391_10
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(13177..14082)
DNA (906bp) protein (302aa)
Uncharacterized protein n=5 Tax=Erysipelotrichaceae RepID=B0N6M0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS17458.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
L1_007_122G1_scaffold_391_11
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(15084..15371)
DNA (288bp) protein (96aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
CRISPR-associated endoribonuclease Cas2 n=5 Tax=Erysipelotrichaceae RepID=B0N6L8_9FIRM
CRISPR-associated protein Cas2
L1_007_122G1_scaffold_391_12
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(15371..16369)
DNA (999bp) protein (333aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
cas1-2: CRISPR-associated endonuclease Cas1 2 (EC:3.1.-.-)
CRISPR-associated endonuclease Cas1 n=4 Tax=Coprobacillus RepID=G9R5N2_9FIRM
L1_007_122G1_scaffold_391_13
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(16381..16875)
DNA (495bp) protein (165aa)
CRISPR-associated protein Cas4 n=1 Tax=Clostridium ramosum DSM 1402 RepID=B0N6L6_9FIRM
CRISPR-associated protein Cas4 {ECO:0000313|EMBL:EDS17454.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
cas4; CRISPR-associated protein Cas4
L1_007_122G1_scaffold_391_14
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(16886..19393)
DNA (2508bp) protein (836aa)
CRISPR-associated helicase cas3 n=3 Tax=Coprobacillus RepID=G9R5N3_9FIRM
CRISPR-associated helicase cas3 {ECO:0000313|EMBL:EHM89753.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
cas3; crispr-associated helicase Cas3
L1_007_122G1_scaffold_391_15
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(19431..20132)
DNA (702bp) protein (234aa)
CRISPR-associated protein cas5, subtype I-b/hmari n=2 Tax=Coprobacillus RepID=G9R5N4_9FIRM
CRISPR-associated protein cas5, subtype I-b/hmari {ECO:0000313|EMBL:EHM89754.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
cas5; cas5h: CRISPR-associated protein Cas5
L1_007_122G1_scaffold_391_16
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(20136..21071)
DNA (936bp) protein (312aa)
Uncharacterized protein n=3 Tax=Coprobacillus RepID=G9R5N5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM89755.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
putative protein predicted to be involved in DNArepair
L1_007_122G1_scaffold_391_17
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(21064..22779)
DNA (1716bp) protein (572aa)
Uncharacterized protein n=3 Tax=Coprobacillus RepID=H1AR83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHQ44998.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
hypothetical protein
L1_007_122G1_scaffold_391_18
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(22794..23486)
DNA (693bp) protein (231aa)
CRISPR-associated endoribonuclease cas6 n=4 Tax=Coprobacillus RepID=G9R5N8_9FIRM
CRISPR-associated endoribonuclease cas6 {ECO:0000313|EMBL:EHM89758.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
cas6; CRISPR-associated protein Cas6
L1_007_122G1_scaffold_391_19
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(23952..26246)
DNA (2295bp) protein (765aa)
Glycosyl hydrolase family 38 N-terminal domain protein n=3 Tax=Erysipelotrichaceae RepID=B0N6L0_9FIRM
Glycosyl hydrolase family 38 N-terminal domain protein {ECO:0000313|EMBL:EDS17448.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
alpha-mannosidase
L1_007_122G1_scaffold_391_20
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(26221..26607)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. D7 RepID=C3RMY6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM89759.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
hypothetical protein
L1_007_122G1_scaffold_391_21
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(26654..27685)
DNA (1032bp) protein (344aa)
PTS system IIC component n=4 Tax=Coprobacillus RepID=R5RFK9_9FIRM
PTS system IIC component {ECO:0000313|EMBL:CCZ31727.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
manP; PTS system fructose/mannitol (fru) transporter subunit IIABC
L1_007_122G1_scaffold_391_22
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(27740..28039)
DNA (300bp) protein (100aa)
PTS system, Fru family, IIB component n=5 Tax=Erysipelotrichaceae RepID=B0N6K8_9FIRM
PTS system, Fru family, IIB component {ECO:0000313|EMBL:EHM89761.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
fructose-like phosphotransferase enzyme IIB component 2
L1_007_122G1_scaffold_391_23
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(28040..28489)
DNA (450bp) protein (150aa)
PTS system, fructose subfamily, IIA component n=1 Tax=Coprobacillus sp. D7 RepID=C3RMY3_9FIRM
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 {ECO:0000313|EMBL:EDS17445.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
PTS system transporter subunit IIA
L1_007_122G1_scaffold_391_24
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

28685..30619
DNA (1935bp) protein (645aa)
PRD domain protein n=3 Tax=Erysipelotrichaceae RepID=B0N6K6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM89763.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
transcription antiterminator
L1_007_122G1_scaffold_391_25
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30620..31726)
DNA (1107bp) protein (369aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=E4LTD4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR37954.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
hypothetical protein DUF1703
L1_007_122G1_scaffold_391_26
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31870..32256)
DNA (387bp) protein (129aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LVV2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR37036.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
hypothetical protein
L1_007_122G1_scaffold_391_27
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(32325..34589)
DNA (2265bp) protein (755aa)
DNA primase small subunit n=1 Tax=[Eubacterium] cylindroides ATCC 27803 RepID=U2PQ87_9FIRM
DNA primase small subunit {ECO:0000313|EMBL:ERK46301.1}; TaxID=649755 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides ATCC 27803.;"
type III restriction protein res subunit
L1_007_122G1_scaffold_391_28
unknown

Not on your lists

comp(34743..34922)
DNA (180bp) protein (60aa)

This feature has no annotations

L1_007_122G1_scaffold_391_29
Helicobacter pylori, Helicobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35070..36290)
DNA (1221bp) protein (407aa)
Type II restriction enzyme n=1 Tax=Helicobacter pylori (strain F32) RepID=E6NN43_HELPL
Type II restriction enzyme
Type II restriction enzyme {ECO:0000313|EMBL:BAJ57769.1}; TaxID=102608 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter.;" source="Helicobacter pylori (strain F32).;"
L1_007_122G1_scaffold_391_30
Firmicutes bacterium CAG:884, Firmicutes, Bacteria

Not on your lists

comp(36294..37874)
DNA (1581bp) protein (527aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:884 RepID=R5MRW9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY94208.1}; TaxID=1262990 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:884.;"
putative restriction enzyme
Displaying items 1-30 of 68 in total

View Taxonomy