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L1_007_122G1_scaffold_393

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Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_393_1
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

421..1434
DNA (1014bp) protein (338aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNF1_9FIRM
LacI family transcriptional regulator {ECO:0000313|EMBL:KJF40952.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
LacI family transcriptional regulator
L1_007_122G1_scaffold_393_2
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1556..2914
DNA (1359bp) protein (453aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNF3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75664.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
NADH:flavin oxidoreductase
L1_007_122G1_scaffold_393_3
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2945..3712
DNA (768bp) protein (256aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNF5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75666.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
3-oxoacyl-ACP reductase
L1_007_122G1_scaffold_393_4
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3725..5674
DNA (1950bp) protein (650aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNF6_9FIRM
Oxidoreductase {ECO:0000313|EMBL:KJF40947.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
L1_007_122G1_scaffold_393_5
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5743..5973
DNA (231bp) protein (77aa)
Uncharacterized protein {ECO:0000313|EMBL:KJF40946.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L1_007_122G1_scaffold_393_6
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5966..6718)
DNA (753bp) protein (251aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNF7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75668.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Predicted nucleotidyltransferase
L1_007_122G1_scaffold_393_7
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7096..8343)
DNA (1248bp) protein (416aa)
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
RNA-splicing ligase RtcB n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNF8_9FIRM
protein RtcB homolog
L1_007_122G1_scaffold_393_8
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8361..9467)
DNA (1107bp) protein (369aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNF9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75670.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
stomatin family protein
L1_007_122G1_scaffold_393_9
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9967..10878)
DNA (912bp) protein (304aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75671.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L1_007_122G1_scaffold_393_10
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10875..12116)
DNA (1242bp) protein (414aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNG1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF41013.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L1_007_122G1_scaffold_393_11
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


12500..13897
DNA (1398bp) protein (466aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNG2_9FIRM
L1_007_122G1_scaffold_393_12
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14000..15433
DNA (1434bp) protein (478aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNG3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF40942.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
peptidase M20
L1_007_122G1_scaffold_393_13
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15489..16724
DNA (1236bp) protein (412aa)
aminopeptidase 2 (EC:3.4.11.-)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNG4_9FIRM
Aminopeptidase PepS {ECO:0000313|EMBL:KJF41012.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L1_007_122G1_scaffold_393_14
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16835..17173)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NNB3_9FIRM
Transposase {ECO:0000313|EMBL:KJF40478.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
IS200/IS605 family transposase
L1_007_122G1_scaffold_393_15
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17816..18439)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90B8 RepID=R0B1M7_9CLOT
Methyltransferase {ECO:0000313|EMBL:KJF40941.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Methylase involved in ubiquinone/menaquinone biosynthesis
L1_007_122G1_scaffold_393_16
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18997..20535)
DNA (1539bp) protein (513aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNG8_9FIRM
Signal transduction histidine kinase
L1_007_122G1_scaffold_393_17
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20532..21224)
DNA (693bp) protein (231aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNG9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75444.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_007_122G1_scaffold_393_18
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21470..22276
DNA (807bp) protein (269aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNH0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75445.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
glycerophosphoryl diester phosphodiesterase
L1_007_122G1_scaffold_393_19
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22451..23107
DNA (657bp) protein (219aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNH1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75446.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L1_007_122G1_scaffold_393_20
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23194..24783)
DNA (1590bp) protein (530aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNH2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75447.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
XRE family transcriptional regulator
L1_007_122G1_scaffold_393_21
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24822..25601)
DNA (780bp) protein (260aa)
HAD-superfamily hydrolase, subfamily IIA (EC:3.1.3.41)
HAD hydrolase, family IIA n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNH3_9FIRM
HAD hydrolase, family IIA {ECO:0000313|EMBL:EHL75448.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L1_007_122G1_scaffold_393_22
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25917..26906
DNA (990bp) protein (330aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNH4_9FIRM
Glycosyl transferase family 2 {ECO:0000313|EMBL:KJF40936.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Predicted glycosyltransferases
L1_007_122G1_scaffold_393_23
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26973..27443
DNA (471bp) protein (157aa)
RpiB/LacA/LacB family sugar-phosphate isomerase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNH5_9FIRM
RpiB/LacA/LacB family sugar-phosphate isomerase {ECO:0000313|EMBL:EHL75450.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
RpiB/LacA/LacB family sugar-phosphate isomerase
L1_007_122G1_scaffold_393_24
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27621..28223
DNA (603bp) protein (201aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNH6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75451.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L1_007_122G1_scaffold_393_25
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28737..30104)
DNA (1368bp) protein (456aa)
MATE efflux family protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNH8_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EHL75453.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
putative efflux protein, MATE family
L1_007_122G1_scaffold_393_26
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30167..32002)
DNA (1836bp) protein (612aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNH9_9FIRM
hypothetical protein
L1_007_122G1_scaffold_393_27
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32186..32710
DNA (525bp) protein (175aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNI0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75455.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L1_007_122G1_scaffold_393_28
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32787..33623
DNA (837bp) protein (279aa)
Cof-like hydrolase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNI1_9FIRM
Cof-like hydrolase {ECO:0000313|EMBL:EHL75456.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
HAD-superfamily hydrolase, subfamily IIB
L1_007_122G1_scaffold_393_29
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33823..34392
DNA (570bp) protein (190aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNI2_9FIRM
Membrane protein {ECO:0000313|EMBL:KJF40930.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
membrane protein
L1_007_122G1_scaffold_393_30
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34561..35052
DNA (492bp) protein (164aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNI3_9FIRM
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EHL75458.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
RNA polymerase ECF subfamily sigma factor
Displaying items 1-30 of 43 in total

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