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L1_007_122G1_scaffold_412

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_412_1
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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248..1438
DNA (1191bp) protein (397aa)
iscS3; putative cysteine desulfurase (EC:2.8.1.7)
Aminotransferase class V n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HTK4_9FIRM
Aminotransferase class V {ECO:0000313|EMBL:CDB41198.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L1_007_122G1_scaffold_412_2
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1512..2684
DNA (1173bp) protein (391aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
Probable tRNA sulfurtransferase n=1 Tax=Clostridium sp. CAG:413 RepID=R6NW57_9CLOT
thiazole biosynthesis/tRNA modification protein ThiI
L1_007_122G1_scaffold_412_3
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2725..3969
DNA (1245bp) protein (415aa)
Putative competence-damage inducible protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I709_9FIRM
Putative competence-damage inducible protein {ECO:0000256|HAMAP-Rule:MF_00226}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
competence/damage-inducible protein CinA
L1_007_122G1_scaffold_412_4
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4048..5040
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HVZ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41195.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
sortase, SrtB family
L1_007_122G1_scaffold_412_5
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5092..6759
DNA (1668bp) protein (556aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HVZ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41195.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L1_007_122G1_scaffold_412_6
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6894..9260
DNA (2367bp) protein (789aa)
Putative sortase SrtB family n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I3X7_9FIRM
Putative sortase SrtB family {ECO:0000313|EMBL:CDB41194.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
SpoIID/LytB domain-containing protein
L1_007_122G1_scaffold_412_7
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9645..12209
DNA (2565bp) protein (855aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:221 RepID=R6G2G9_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB15521.1}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
L1_007_122G1_scaffold_412_8
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12506..13204)
DNA (699bp) protein (233aa)
Fructose-2,6-bisphosphatase (EC:3.1.3.73 5.4.2.1)
Fructose-2 6-bisphosphatase n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5XYD4_9FIRM
Fructose-2 6-bisphosphatase {ECO:0000313|EMBL:CDA20218.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
L1_007_122G1_scaffold_412_9
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13322..13951
DNA (630bp) protein (210aa)
DNA-binding helix-turn-helix protein n=1 Tax=Eubacterium sp. CAG:180 RepID=R5N0R7_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CCY91176.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
helix-turn-helix domain-containing protein
L1_007_122G1_scaffold_412_10
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14153..15577)
DNA (1425bp) protein (475aa)
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
glycogen/starch synthases, ADP-glucose type (EC:2.4.1.21)
Glycogen synthase n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MIY4_9FIRM
L1_007_122G1_scaffold_412_11
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15628..16755)
DNA (1128bp) protein (376aa)
glucose-1-phosphate adenylyltransferase, GlgD subunit (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase GlgD subunit n=1 Tax=Eubacterium sp. CAG:180 RepID=R5N280_9FIRM
Glucose-1-phosphate adenylyltransferase GlgD subunit {ECO:0000313|EMBL:CCY91691.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
L1_007_122G1_scaffold_412_12
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16859..18076)
DNA (1218bp) protein (406aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Glucose-1-phosphate adenylyltransferase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6ITJ4_9FIRM
glucose-1-phosphate adenylyltransferase
L1_007_122G1_scaffold_412_13
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18148..20133)
DNA (1986bp) protein (662aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase (EC:2.4.1.18)
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DUY9_9FIRM
L1_007_122G1_scaffold_412_14
Anaerotruncus sp. CAG:528, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20651..21859)
DNA (1209bp) protein (403aa)
Iron-containing alcohol dehydrogenase n=1 Tax=Anaerotruncus sp. CAG:528 RepID=R5XIF9_9FIRM
Iron-containing alcohol dehydrogenase {ECO:0000313|EMBL:CDA12164.1}; TaxID=1262700 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:528.;"
iron-containing alcohol dehydrogenase
L1_007_122G1_scaffold_412_15
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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22331..23260
DNA (930bp) protein (310aa)
MoxR-like ATPases (EC:3.6.3.-)
ATPase family associated with various cellular activities (AAA) n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NTX3_9FIRM
ATPase family associated with various cellular activities (AAA) {ECO:0000313|EMBL:EDN00320.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L1_007_122G1_scaffold_412_16
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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23265..24281
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWJ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF57123.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L1_007_122G1_scaffold_412_17
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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24278..26623
DNA (2346bp) protein (782aa)
Transglutaminase-like protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWJ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF57122.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
Transglutaminase-like enzymes, putative cysteine proteases
L1_007_122G1_scaffold_412_18
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26677..28206
DNA (1530bp) protein (510aa)
Sodium/proline symporter n=1 Tax=Clostridium leptum CAG:27 RepID=R6N5U0_9CLOT
Sodium/proline symporter {ECO:0000313|EMBL:EDO61652.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
putP; sodium/proline symporter
L1_007_122G1_scaffold_412_19
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28408..29589
DNA (1182bp) protein (394aa)
Metalloendopeptidase-like membrane protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6P1U6_9CLOT
Metalloendopeptidase-like membrane protein {ECO:0000313|EMBL:CDC12446.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
peptidase M23
L1_007_122G1_scaffold_412_20
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29805..30218)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MC61_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS68403.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
Predicted transcriptional regulators
L1_007_122G1_scaffold_412_21
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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comp(30298..30792)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YB87_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL12401.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L1_007_122G1_scaffold_412_22
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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30923..31165
DNA (243bp) protein (81aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VRR5_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDO61745.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Helix-turn-helix.
L1_007_122G1_scaffold_412_23
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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31255..31473
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5ELY4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX93423.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
Predicted transcriptional regulator
Displaying 23 items

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