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L1_007_122G1_scaffold_461

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_461_1
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(129..1478)
DNA (1350bp) protein (450aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1053205 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus HuA3-9.;"
Two component system histidine kinase n=1 Tax=Bacillus cereus HuA3-9 RepID=R8D3M8_BACCE
sensor histidine kinase YkoH
L1_007_122G1_scaffold_461_2
Prevotella sp. CAG:1031, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(1501..2175)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Prevotella sp. CAG:1031 RepID=R5AV46_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCX44582.1}; TaxID=1262917 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:1031.;"
two-component response regulator
L1_007_122G1_scaffold_461_3
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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2781..4109
DNA (1329bp) protein (443aa)
Peptidase propeptide and YPEB domain protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P821_9FIRM
Peptidase propeptide and YPEB domain protein {ECO:0000313|EMBL:EDM97895.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L1_007_122G1_scaffold_461_4
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4316..6685
DNA (2370bp) protein (790aa)
GPH family glycoside-pentoside-hexuronide:cation symporter n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6EQ19_9FIRM
GPH family glycoside-pentoside-hexuronide:cation symporter {ECO:0000313|EMBL:CDA92012.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
L1_007_122G1_scaffold_461_5
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7038..10151
DNA (3114bp) protein (1038aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I4J4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41414.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Alpha-mannosidase
L1_007_122G1_scaffold_461_6
Clostridium sp. CAG:349, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10344..11075)
DNA (732bp) protein (244aa)
Purine nucleoside phosphorylase DeoD-type {ECO:0000256|HAMAP-Rule:MF_01627}; Short=PNP {ECO:0000256|HAMAP-Rule:MF_01627};; EC=2.4.2.1 {ECO:0000256|HAMAP-Rule:MF_01627};; TaxID=1262797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:349.;"
deoD; purine nucleoside phosphorylase (EC:2.4.2.1)
Purine nucleoside phosphorylase DeoD-type n=1 Tax=Clostridium sp. CAG:349 RepID=R6XWN1_9CLOT
L1_007_122G1_scaffold_461_7
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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comp(11097..11753)
DNA (657bp) protein (219aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
deoxyribose-phosphate aldolase (EC:4.1.2.4)
Deoxyribose-phosphate aldolase n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DVP3_9FIRM
L1_007_122G1_scaffold_461_8
Clostridiales bacterium oral taxon 876, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11927..12844)
DNA (918bp) protein (306aa)
Oxidoreductase, aldo/keto reductase family protein n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2D6L1_9FIRM
Oxidoreductase, aldo/keto reductase family protein {ECO:0000313|EMBL:ERI92425.1}; TaxID=1321778 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium oral taxon 876 str. F0540.;"
aldo/keto reductase
L1_007_122G1_scaffold_461_9
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12960..13886)
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6E4W7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA91651.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
L1_007_122G1_scaffold_461_10
Clostridium kluyveri, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14175..14672
DNA (498bp) protein (166aa)
Predicted sigma factor n=2 Tax=Clostridium kluyveri RepID=A5N927_CLOK5
sigma factor
Predicted sigma factor {ECO:0000313|EMBL:EDK33808.1}; TaxID=431943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680).;"
L1_007_122G1_scaffold_461_11
Lysinibacillus odysseyi, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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14653..15732
DNA (1080bp) protein (360aa)
Putative uncharacterized protein n=1 Tax=Paenibacillus sp. HGF5 RepID=F3M730_9BACL
Uncharacterized protein {ECO:0000313|EMBL:KGR82774.1}; TaxID=1220589 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lysinibacillus.;" source="Lysinibacillus odysseyi 34hs-1 = NBRC 100172.;"
hypothetical protein
L1_007_122G1_scaffold_461_12
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15798..17675)
DNA (1878bp) protein (626aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HZE9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB42435.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L1_007_122G1_scaffold_461_13
unknown

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comp(17763..17933)
DNA (171bp) protein (57aa)

This feature has no annotations

L1_007_122G1_scaffold_461_14
Clostridium tyrobutyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17961..18302)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Clostridium tyrobutyricum RepID=UPI000309035F
Uncharacterized protein {ECO:0000313|EMBL:CDL90866.1}; TaxID=1408889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tyrobutyricum DIVETGP.;"
hypothetical protein
L1_007_122G1_scaffold_461_15
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18481..19146)
DNA (666bp) protein (222aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A7VU97_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO60547.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Polypeptide composition of the spore coat protein CotJC
L1_007_122G1_scaffold_461_16
Anaerotruncus sp. CAG:528, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19400..21850
DNA (2451bp) protein (817aa)
Beta-glucosidase-like glycosyl hydrolase n=1 Tax=Anaerotruncus sp. CAG:528 RepID=R5X8A8_9FIRM
Beta-glucosidase-like glycosyl hydrolase {ECO:0000313|EMBL:CDA11898.1}; TaxID=1262700 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:528.;"
beta-glucosidase-like glycosyl hydrolase
L1_007_122G1_scaffold_461_17
Paenibacillus sp. FSL H8-237, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21968..24061)
DNA (2094bp) protein (698aa)
Carbohydrate binding module (Family 6) n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J1R6_9BACL
Carbohydrate binding family protein {ECO:0000313|EMBL:ETT56944.1}; TaxID=1227350 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL H8-237.;"
alpha-galactosidase
L1_007_122G1_scaffold_461_18
Paenibacillus sp. Y412MC10, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(24073..27066)
DNA (2994bp) protein (998aa)
Uncharacterized protein n=1 Tax=Geobacillus sp. (strain Y412MC10) RepID=D3EC35_GEOS4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX65003.1}; TaxID=481743 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Geobacillus sp. (strain Y412MC10).;"
L1_007_122G1_scaffold_461_19
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


27365..27715
DNA (351bp) protein (117aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DPY6_9FIRM
Displaying 19 items

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