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L1_007_122G1_scaffold_463

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_463_1
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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274..627
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HZ31_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB42325.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L1_007_122G1_scaffold_463_2
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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711..2378
DNA (1668bp) protein (556aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6ISQ2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB52300.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
DAK2 domain fusion protein YloV
L1_007_122G1_scaffold_463_3
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2402..4444
DNA (2043bp) protein (681aa)
recG; ATP-dependent DNA helicase RecG (EC:3.6.4.12)
ATP-dependent DNA helicase RecG n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IWF9_9FIRM
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:CDB42327.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L1_007_122G1_scaffold_463_4
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4535..5005)
DNA (471bp) protein (157aa)
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U8J3_ETHHY
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein {ECO:0000313|EMBL:ADU25984.1}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
L1_007_122G1_scaffold_463_5
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5178..5717)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I490_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41319.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
rubrerythrin
L1_007_122G1_scaffold_463_6
Sphaerochaeta coccoides, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(5821..6639)
DNA (819bp) protein (273aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Spirochaeta coccoides (strain ATCC BAA-1237 / DSM 17374 / SPN1) RepID=F4GK32_SPICD
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AEC01804.1}; Flags: Precursor;; TaxID=760011 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta coccoides (strain ATCC BAA-1237 / DSM 17374 / SPN1); (Spirochaeta coccoides).;"
L1_007_122G1_scaffold_463_7
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7055..7597
DNA (543bp) protein (181aa)
Ribosome maturation factor RimM n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DNR1_9FIRM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
16S rRNA processing protein RimM
L1_007_122G1_scaffold_463_8
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7560..8375
DNA (816bp) protein (272aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
tRNA (Guanine37-N(1)-) methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HTG2_9FIRM
L1_007_122G1_scaffold_463_9
Lactobacillus kimbladii, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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8402..9769
DNA (1368bp) protein (456aa)
Uncharacterized protein n=1 Tax=Melissococcus plutonius (strain ATCC 35311 / CIP 104052 / LMG 20360 / NCIMB 702443) RepID=F3Y7T8_MELPT
Uncharacterized protein {ECO:0000313|EMBL:KJY59936.1}; TaxID=1218506 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus kimbladii.;"
hypothetical protein
L1_007_122G1_scaffold_463_10
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9937..10707)
DNA (771bp) protein (257aa)
Stage II sporulation protein R n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I075_9FIRM
Stage II sporulation protein R {ECO:0000313|EMBL:CDB42705.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
stage II sporulation protein R
L1_007_122G1_scaffold_463_11
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10790..11677)
DNA (888bp) protein (296aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5Y164_9FIRM
L1_007_122G1_scaffold_463_12
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12057..13091
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NIX6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC12083.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
membrane protein
L1_007_122G1_scaffold_463_13
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13214..14239
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NJH0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC12308.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
glucan-binding domain-containing protein
L1_007_122G1_scaffold_463_14
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14630..15757)
DNA (1128bp) protein (376aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI000381630F
hypothetical protein
L1_007_122G1_scaffold_463_15
unknown

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comp(16114..16308)
DNA (195bp) protein (65aa)

This feature has no annotations

L1_007_122G1_scaffold_463_16
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16393..17406)
DNA (1014bp) protein (338aa)
Stage V sporulation protein AD n=1 Tax=Clostridium sp. CAG:413 RepID=R6NW89_9CLOT
Stage V sporulation protein AD {ECO:0000313|EMBL:CDC12679.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
stage V sporulation protein AD
L1_007_122G1_scaffold_463_17
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17420..17863)
DNA (444bp) protein (148aa)
Stage V sporulation protein AC n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HUA0_9FIRM
Stage V sporulation protein AC {ECO:0000313|EMBL:CDB41443.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
stage V sporulation protein AC
L1_007_122G1_scaffold_463_18
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18118..18801
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MJ16_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY91730.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
ABC-type antimicrobial peptide transport system, ATPase component
L1_007_122G1_scaffold_463_19
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19085..21079)
DNA (1995bp) protein (665aa)
Peptidase M23 family n=2 Tax=root RepID=R5MEG1_9FIRM
Peptidase M23 family {ECO:0000313|EMBL:CCY89933.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
peptidase M23B
L1_007_122G1_scaffold_463_20
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21216..21677)
DNA (462bp) protein (154aa)
S-ribosylhomocysteine lyase {ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|SAAS:SAAS00059628};; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
quorum-sensing autoinducer 2 (AI-2), LuxS (EC:4.4.1.21)
S-ribosylhomocysteinase LuxS n=1 Tax=Clostridium sp. CAG:217 RepID=R6IQ76_9CLOT
L1_007_122G1_scaffold_463_21
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21692..22639)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6IYA5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB51424.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
hypothetical protein
L1_007_122G1_scaffold_463_22
unknown

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comp(22657..22959)
DNA (303bp) protein (101aa)

This feature has no annotations

L1_007_122G1_scaffold_463_23

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23316..23888
DNA (573bp) protein (191aa)
Lipoprotein n=1 Tax=human gut metagenome RepID=K1S2B4_9ZZZZ
Lipoprotein {ECO:0000313|EMBL:EKC49489.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_122G1_scaffold_463_24

Not on your lists

24402..25685
DNA (1284bp) protein (428aa)
Amidohydrolase n=1 Tax=Clostridium sp. CAG:349 RepID=R6WDA3_9CLOT
Amidohydrolase {ECO:0000313|EMBL:ETJ39259.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
amidohydrolase
L1_007_122G1_scaffold_463_25
BJP_IG2157_Clostridiales_35_16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26067..27692
DNA (1626bp) protein (542aa)
LysM domain protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6NGN7_9CLOT
glycoside hydrolase family protein
Tax=BJP_IG2157_Clostridiales_35_16
Displaying 25 items

View Taxonomy