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L1_007_122G1_scaffold_501

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Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_501_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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199..546
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Escherichia coli KTE100 RepID=S1GKC3_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EOW03407.1}; TaxID=1182699 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE100.;"
yraH; putative fimbrial-like adhesin protein
L1_007_122G1_scaffold_501_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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626..1321
DNA (696bp) protein (232aa)
Gram-negative pili assembly chaperone protein n=30 Tax=Escherichia coli RepID=A8A4V9_ECOHS
pili assembly chaperone
Periplasmic pilin chaperone {ECO:0000313|EMBL:EOV55087.1}; TaxID=1182671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE64.;"
L1_007_122G1_scaffold_501_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1351..3867
DNA (2517bp) protein (839aa)
Fimbrial biogenesis outer membrane usher protein n=14 Tax=Escherichia coli RepID=C6EH81_ECOBD
fimbrial biogenesis outer membrane usher protein
Outer membrane protein {ECO:0000313|EMBL:EOW03409.1}; TaxID=1182699 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE100.;"
L1_007_122G1_scaffold_501_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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3878..4969
DNA (1092bp) protein (364aa)
Uncharacterized fimbrial-like protein YraK n=157 Tax=Escherichia RepID=YRAK_ECOLI
yraK; putative fimbrial-like adhesin protein
Fimbrial family protein {ECO:0000313|EMBL:KEN53059.1}; TaxID=1444116 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 6-537-08_S1_C3.;"
L1_007_122G1_scaffold_501_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5012..5872)
DNA (861bp) protein (287aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1182671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE64.;"
Ribosomal RNA small subunit methyltransferase I n=700 Tax=Enterobacteriaceae RepID=RSMI_ECO57
uroporphyrin-III C/tetrapyrrole methyltransferase
L1_007_122G1_scaffold_501_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5937..7973
DNA (2037bp) protein (679aa)
Penicillin-binding protein activator LpoA n=14 Tax=Escherichia coli RepID=H9UX49_ECOLX
hypothetical protein
Penicillin-binding protein activator LpoA {ECO:0000256|HAMAP-Rule:MF_01890}; Short=PBP activator LpoA {ECO:0000256|HAMAP-Rule:MF_01890};; Flags: Precursor;; TaxID=1169664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli AD30.;"
L1_007_122G1_scaffold_501_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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7931..8326
DNA (396bp) protein (132aa)
UPF0102 protein YraN n=4 Tax=Escherichia coli RepID=D7Y505_ECOLX
UPF0102 protein YraN {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1182699 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE100.;"
hypothetical protein
L1_007_122G1_scaffold_501_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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8346..8936
DNA (591bp) protein (197aa)
DnaA initiator-associating protein DiaA n=655 Tax=Enterobacteriaceae RepID=DIAA_ECO57
diaA; DnaA initiator-associating factor for replication initiation
DnaA initiator-associating protein DiaA {ECO:0000256|HAMAP-Rule:MF_01157, ECO:0000256|SAAS:SAAS00014432}; TaxID=1182703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE107.;"
L1_007_122G1_scaffold_501_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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8946..9521
DNA (576bp) protein (192aa)
Uncharacterized protein YraP n=1098 Tax=Enterobacteriaceae RepID=YRAP_ECO57
yraP; outer membrane lipoprotein
BON domain protein {ECO:0000313|EMBL:KEJ44649.1}; TaxID=1444266 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-427-07_S4_C3.;"
L1_007_122G1_scaffold_501_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9635..10675)
DNA (1041bp) protein (347aa)
UPF0718 protein YraQ n=149 Tax=Enterobacteriaceae RepID=YRAQ_ECOLI
hypothetical protein
Putative permease {ECO:0000313|EMBL:ESA66149.1}; TaxID=1268978 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 113303.;"
L1_007_122G1_scaffold_501_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10748..11383)
DNA (636bp) protein (212aa)
NAD dependent epimerase/dehydratase family protein n=4 Tax=Escherichia coli RepID=D7Y509_ECOLX
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:EOW03417.1}; TaxID=1182699 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE100.;"
NAD-dependent epimerase/dehydratase
L1_007_122G1_scaffold_501_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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11511..12029
DNA (519bp) protein (173aa)
Putative uncharacterized protein yhbO n=1 Tax=Escherichia fergusonii ECD227 RepID=F0JS53_ESCFE
hypothetical protein
Protein yhbO {ECO:0000313|EMBL:ELE57781.1}; TaxID=1182683 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE76.;"
L1_007_122G1_scaffold_501_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12009..12452)
DNA (444bp) protein (148aa)
UPF0306 protein YhbP n=370 Tax=Enterobacteriaceae RepID=YHBP_ECO55
yhbP; hypothetical protein
UPF0306 protein YhbP {ECO:0000256|HAMAP-Rule:MF_00764}; TaxID=1444279 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-373-03_S4_C3.;"
L1_007_122G1_scaffold_501_14
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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12494..12805
DNA (312bp) protein (104aa)
UPF0213 protein YhbQ n=3 Tax=Escherichia coli RepID=S1H3Z3_ECOLX
yhbQ; GIY-YIG nuclease superfamily protein
UPF0213 protein YhbQ {ECO:0000256|HAMAP-Rule:MF_01029}; TaxID=1086030 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 5a str. M90T.;"
L1_007_122G1_scaffold_501_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12792..13295)
DNA (504bp) protein (168aa)
Uncharacterized N-acetyltransferase YhbS n=1340 Tax=Enterobacteriaceae RepID=YHBS_ECO57
yhbS; hypothetical protein
Acyltransferase {ECO:0000313|EMBL:EQZ98233.1}; TaxID=1281269 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3718-1.;"
L1_007_122G1_scaffold_501_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13289..13813)
DNA (525bp) protein (175aa)
Uncharacterized protein YhbT n=1119 Tax=Enterobacteriaceae RepID=YHBT_ECO57
yhbT; hypothetical protein
SCP-2 sterol transfer family protein {ECO:0000313|EMBL:EID68135.1}; TaxID=1090926 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli W26.;"
L1_007_122G1_scaffold_501_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14022..15017
DNA (996bp) protein (332aa)
Peptidase, U32 family n=557 Tax=Enterobacteriaceae RepID=B2NAR9_ECOLX
yhbU; collagenase
Protease {ECO:0000313|EMBL:ELE57786.1}; TaxID=1182683 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE76.;"
L1_007_122G1_scaffold_501_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15026..15904
DNA (879bp) protein (293aa)
Uncharacterized protein YhbV n=207 Tax=Enterobacteriaceae RepID=YHBV_ECOLI
yhbV; protease
Protease {ECO:0000313|EMBL:KDV63470.1}; TaxID=1446581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O128:H2 str. 2011C-3317.;"
L1_007_122G1_scaffold_501_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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15985..16992
DNA (1008bp) protein (336aa)
Luciferase oxidoreductase, group 1 family protein {ECO:0000313|EMBL:KDZ39042.1}; EC=1.-.-.- {ECO:0000313|EMBL:KDZ39042.1};; TaxID=1444137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S3_C1.;"
Uncharacterized protein YhbW n=714 Tax=Enterobacteriaceae RepID=YHBW_ECOL6
luciferase-like monooxygenase
L1_007_122G1_scaffold_501_20
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17110..18354)
DNA (1245bp) protein (415aa)
Tryptophan-specific transport protein n=199 Tax=cellular organisms RepID=MTR_ECOLI
mtr; Tryptophan-specific transport protein
Mtr protein {ECO:0000313|EMBL:CEP56468.1}; TaxID=42897 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 2a.;"
L1_007_122G1_scaffold_501_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18508..20397)
DNA (1890bp) protein (630aa)
deaD; cold-shock DEAD box protein A (EC:3.6.1.-)
ATP-dependent RNA helicase DeaD {ECO:0000256|HAMAP-Rule:MF_00964}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00964};; Cold-shock DEAD box protein A {ECO:0000256|HAMAP-Rule:MF_00964}; TaxID=1444081 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-392-07_S1_C2.;"
ATP-dependent RNA helicase DeaD n=860 Tax=Bacteria RepID=DEAD_ECOL6
L1_007_122G1_scaffold_501_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20577..21461)
DNA (885bp) protein (295aa)
Lipoprotein NlpI n=1237 Tax=Enterobacteriaceae RepID=NLPI_ECO57
hypothetical protein
Lipoprotein NlpI {ECO:0000256|PIRNR:PIRNR004654}; TaxID=1444258 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-005-03_S4_C3.;"
L1_007_122G1_scaffold_501_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21570..23705)
DNA (2136bp) protein (712aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1182699 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE100.;"
pnp; polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=3 Tax=Escherichia coli RepID=L3I3B2_ECOLX
L1_007_122G1_scaffold_501_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24296..25240)
DNA (945bp) protein (315aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1182676 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE69.;"
tRNA pseudouridine synthase B n=1113 Tax=Enterobacteriaceae RepID=TRUB_ECO57
truB; tRNA pseudouridine synthase B
L1_007_122G1_scaffold_501_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25240..25641)
DNA (402bp) protein (134aa)
Ribosome-binding factor A n=4 Tax=Enterobacteriaceae RepID=C1HIH1_9ESCH
rbfA; ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=701177 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O55:H7 (strain CB9615 / EPEC).;"
L1_007_122G1_scaffold_501_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25805..28477)
DNA (2673bp) protein (891aa)
Translation initiation factor IF-2 n=4 Tax=Escherichia coli RepID=D7Y525_ECOLX
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=749537 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 115-1.;"
infB; translation initiation factor IF-2
L1_007_122G1_scaffold_501_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(28502..29989)
DNA (1488bp) protein (496aa)
Transcription termination/antitermination protein NusA n=1036 Tax=Enterobacteriaceae RepID=NUSA_ECO57
nusA; Transcription elongation factor
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1169376 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE112.;"
L1_007_122G1_scaffold_501_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30017..30469)
DNA (453bp) protein (151aa)
Ribosome maturation factor RimP n=796 Tax=Enterobacteriaceae RepID=RIMP_ECO24
ribosome maturation protein RimP
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1169353 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE36.;"
L1_007_122G1_scaffold_501_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31100..32443
DNA (1344bp) protein (448aa)
argG; argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00581, ECO:0000256|SAAS:SAAS00009500}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00581, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00581}; TaxID=585395 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O103:H2 (strain 12009 / EHEC).;"
Argininosuccinate synthase n=122 Tax=Enterobacteriaceae RepID=ASSY_ECO8A
L1_007_122G1_scaffold_501_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(32451..33968)
DNA (1518bp) protein (506aa)
Arylsulfatase {ECO:0000313|EMBL:EFJ97264.1}; EC=3.1.6.- {ECO:0000313|EMBL:EFJ97264.1};; TaxID=749537 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 115-1.;"
Arylsulfatase n=3 Tax=Escherichia coli RepID=D7Y530_ECOLX
sulfatase
Displaying items 1-30 of 42 in total

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