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L1_007_122G1_scaffold_516

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_516_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..171)
DNA (171bp) protein (57aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
Phosphate import ATP-binding protein PstB n=8 Tax=Bifidobacterium RepID=PSTB_BIFLO
pstB; Phosphate transport ATP-binding protein pstB
L1_007_122G1_scaffold_516_2
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(213..1211)
DNA (999bp) protein (333aa)
Phosphate transport system permease protein pstA n=4 Tax=Bifidobacterium breve RepID=F9XYG3_BIFBU
Phosphate transport system permease protein pstA
Phosphate transport system permease protein pstA {ECO:0000313|EMBL:AHJ21872.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_007_122G1_scaffold_516_3
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1211..2164)
DNA (954bp) protein (318aa)
Phosphate ABC transporter, permease protein PstC n=6 Tax=Bifidobacterium breve RepID=F6C7P2_BIFBA
Phosphate transport system permease protein pstC
Phosphate transport system permease protein pstC {ECO:0000313|EMBL:ABE96347.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L1_007_122G1_scaffold_516_4
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2371..3501)
DNA (1131bp) protein (377aa)
Phosphate-binding protein PstS n=4 Tax=Bifidobacterium breve RepID=F9XYN9_BIFBU
Phosphate-binding protein
Phosphate-binding protein PstS {ECO:0000256|PIRNR:PIRNR002756}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L1_007_122G1_scaffold_516_5
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3755..4525)
DNA (771bp) protein (257aa)
Two-component response regulator PhoP n=4 Tax=Bifidobacterium breve RepID=F9XYP0_BIFBU
Two-component response regulator PhoP
Uncharacterized protein {ECO:0000313|EMBL:EPD76024.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_007_122G1_scaffold_516_6
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4578..5915)
DNA (1338bp) protein (446aa)
phoR; Phosphate regulon sensor protein PhoR (EC:2.7.3.-)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
Phosphate regulon sensor protein PhoR n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9XYP1_BIFBU
L1_007_122G1_scaffold_516_7
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6011..7318)
DNA (1308bp) protein (436aa)
Transporter, major facilitator family protein n=2 Tax=Bifidobacterium breve RepID=F6C7P6_BIFBA
Transporter, MFS superfamily
Uncharacterized protein {ECO:0000313|EMBL:EPD76026.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_007_122G1_scaffold_516_8
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7588..8301)
DNA (714bp) protein (238aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
MTA/SAH nucleosidase n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CRY1_BIFBR
5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase
L1_007_122G1_scaffold_516_9
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8441..9673)
DNA (1233bp) protein (411aa)
3-deoxy-7-phosphoheptulonate synthase n=3 Tax=Bifidobacterium breve RepID=F6C7P8_BIFBA
3-deoxy-7-phosphoheptulonate synthase
3-deoxy-7-phosphoheptulonate synthase {ECO:0000313|EMBL:EPD76028.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_007_122G1_scaffold_516_10
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9738..10874)
DNA (1137bp) protein (379aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Phospho-2-dehydro-3-deoxyheptonate aldolase n=3 Tax=Bifidobacterium breve RepID=D4BQJ6_BIFBR
3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive
L1_007_122G1_scaffold_516_11
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11094..12440)
DNA (1347bp) protein (449aa)
Peptidase C1-like family n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BQJ5_BIFBR
Aminopeptidase C
Peptidase C1-like family protein {ECO:0000313|EMBL:ERI86825.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L1_007_122G1_scaffold_516_12
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12558..13997)
DNA (1440bp) protein (480aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9XYQ8_BIFBU
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE96367.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L1_007_122G1_scaffold_516_13
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14136..14813)
DNA (678bp) protein (226aa)
pcp; Pyrrolidone-carboxylate peptidase (EC:3.4.19.3)
Pyrrolidone-carboxylate peptidase {ECO:0000313|EMBL:ABE96368.1}; EC=3.4.19.3 {ECO:0000313|EMBL:ABE96368.1};; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
Pyrrolidone-carboxylate peptidase n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9XYQ9_BIFBU
L1_007_122G1_scaffold_516_14
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14852..15697)
DNA (846bp) protein (282aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=3 Tax=Bifidobacterium breve RepID=F6C7Z1_BIFBA
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
L1_007_122G1_scaffold_516_15
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15768..16832)
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2E3C2_BIFBR
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI86821.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L1_007_122G1_scaffold_516_16
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16843..18393)
DNA (1551bp) protein (517aa)
Peptidase, U32 family {ECO:0000313|EMBL:AEF27006.1}; EC=3.4.-.- {ECO:0000313|EMBL:AEF27006.1};; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
peptidase, U32 family (EC:3.4.-.-)
Peptidase, U32 family n=1 Tax=Bifidobacterium breve (strain ACS-071-V-Sch8b) RepID=F6C7Z3_BIFBA
L1_007_122G1_scaffold_516_17
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18467..19417
DNA (951bp) protein (317aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|SAAS:SAAS00014918}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|SAAS:SAAS00014917};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CQL7_BIFBR
tRNA (Guanine-N1) -methyltransferase
L1_007_122G1_scaffold_516_18
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19419..20000)
DNA (582bp) protein (194aa)
RNA methyltransferase, RsmD family n=2 Tax=Bifidobacterium breve RepID=F6C7Z5_BIFBA
Methyltransferase
Methyltransferase {ECO:0000313|EMBL:AHJ21899.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_007_122G1_scaffold_516_19
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20336..22942)
DNA (2607bp) protein (869aa)
Putative ATP-dependent DNA helicase RecG n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2DYP2_BIFBR
Putative ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:ERI86817.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
type III restriction enzyme, res subunit
L1_007_122G1_scaffold_516_20
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(23049..23270)
DNA (222bp) protein (74aa)
50S ribosomal protein L28 n=6 Tax=Bifidobacterium breve RepID=F6C7Z7_BIFBA
LSU ribosomal protein L28P
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_007_122G1_scaffold_516_21
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23564..24580
DNA (1017bp) protein (339aa)
Kinase, PfkB family n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CQL2_BIFBR
Ribokinase
Kinase, PfkB family {ECO:0000313|EMBL:ERI86815.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L1_007_122G1_scaffold_516_22
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24734..26035
DNA (1302bp) protein (434aa)
Transporter, major facilitator family protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2C8J7_BIFBR
Transporter, MFS superfamily
Transporter, major facilitator family protein {ECO:0000313|EMBL:ERI86814.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L1_007_122G1_scaffold_516_23
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26216..26704)
DNA (489bp) protein (163aa)
Transcriptional regulator, MerR family n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9XYR9_BIFBU
Transcriptional regulator, MerR family
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ABE96378.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L1_007_122G1_scaffold_516_24
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26826..27215)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2E3B5_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:ERI86811.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Hypothetical protein
L1_007_122G1_scaffold_516_25
Bifidobacterium ruminantium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27205..27528)
DNA (324bp) protein (108aa)
RelB antitoxin n=3 Tax=Bifidobacterium RepID=D6ZXZ7_BIFLJ
RelB antitoxin
Addiction module antitoxin, RelB/DinJ family {ECO:0000313|EMBL:KFI87450.1}; TaxID=78346 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium ruminantium.;"
L1_007_122G1_scaffold_516_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27605..27904
DNA (300bp) protein (100aa)
Vacuole effluxer Atg22 like protein n=3 Tax=Bifidobacterium RepID=D6ZXZ6_BIFLJ
vacuole effluxer Atg22 like protein
Vacuole effluxer Atg22 like protein {ECO:0000313|EMBL:ADG99792.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L1_007_122G1_scaffold_516_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27923..28216)
DNA (294bp) protein (98aa)
Putative helix-turn-helix protein n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3KZB9_BIFBR
Transcriptional regulator
XRE family transcriptional regulator {ECO:0000313|EMBL:KEY31735.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
Displaying 27 items

View Taxonomy