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L1_007_122G1_scaffold_518

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_518_1
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..1748)
DNA (1746bp) protein (582aa)
translation elongation factor 2 (EF-2/EF-G) (EC:3.6.5.3)
Putative translation elongation factor G n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I8C7_9FIRM
Putative translation elongation factor G {ECO:0000313|EMBL:CDB41681.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L1_007_122G1_scaffold_518_2
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2036..2989)
DNA (954bp) protein (318aa)
S1 RNA binding domain protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IY11_9FIRM
S1 RNA binding domain protein {ECO:0000313|EMBL:CDB42867.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
RNA binding S1 domain-containing protein
L1_007_122G1_scaffold_518_3
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3205..3411
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003727C54
PF06107 family protein {ECO:0000313|EMBL:EJF42557.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L1_007_122G1_scaffold_518_4
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3487..4563
DNA (1077bp) protein (359aa)
Peptide chain release factor 1 n=1 Tax=Clostridium sp. CAG:413 RepID=R6NI79_9CLOT
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
bacterial peptide chain release factor 1 (bRF-1)
L1_007_122G1_scaffold_518_5
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4599..5624
DNA (1026bp) protein (342aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family n=1 Tax=Clostridium sp. MSTE9 RepID=J1HA80_9CLOT
ywlC; putative tRNA threonylcarbamoyladenosine biosynthesis protein YwlC
L1_007_122G1_scaffold_518_6
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5715..6332
DNA (618bp) protein (206aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MMM2_9FIRM
L1_007_122G1_scaffold_518_7
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6375..6962
DNA (588bp) protein (196aa)
Transglycosylase SLT domain protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6P012_9CLOT
Transglycosylase SLT domain protein {ECO:0000313|EMBL:CDC11861.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
Lytic transglycosylase catalytic
L1_007_122G1_scaffold_518_8
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6959..8377
DNA (1419bp) protein (473aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
Aspartyl aminopeptidase (EC:3.4.11.-)
M18 family aminopeptidase n=3 Tax=root RepID=R5N156_9FIRM
L1_007_122G1_scaffold_518_9
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8937..9152)
DNA (216bp) protein (72aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5E3B6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15198.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_122G1_scaffold_518_10
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9277..9864
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6DJQ6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA78102.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
hypothetical protein
L1_007_122G1_scaffold_518_11
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9914..10387)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5KNP4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY66699.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
hypothetical protein
L1_007_122G1_scaffold_518_12
unknown

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comp(10402..10842)
DNA (441bp) protein (147aa)

This feature has no annotations

L1_007_122G1_scaffold_518_13
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11465..12124)
DNA (660bp) protein (220aa)
TrkA N-terminal domain protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P9B9_9FIRM
TrkA N-terminal domain protein {ECO:0000313|EMBL:EDS11988.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
TrkA-N domain-containing protein
L1_007_122G1_scaffold_518_14
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12206..12829)
DNA (624bp) protein (208aa)
K+ transport system, NAD-binding component n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LSR0_CLOCD
K+ transport system, NAD-binding component
K+ transport system, NAD-binding component {ECO:0000313|EMBL:AEV69412.1}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
L1_007_122G1_scaffold_518_15
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12962..13468)
DNA (507bp) protein (169aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Phosphodiesterase family protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VR62_9CLOT
phosphoesterase, MJ0936 family
L1_007_122G1_scaffold_518_16
unknown

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13524..13796
DNA (273bp) protein (91aa)

This feature has no annotations

L1_007_122G1_scaffold_518_17
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13823..14215
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6P045_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC11896.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
hypothetical protein
L1_007_122G1_scaffold_518_18
unknown

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14217..14783
DNA (567bp) protein (189aa)

This feature has no annotations

L1_007_122G1_scaffold_518_19
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14840..15676)
DNA (837bp) protein (279aa)
ABC 3 transport family protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6RZV1_9CLOT
ABC 3 transport family protein {ECO:0000313|EMBL:CDC39912.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
znuB; ABC-type Mn2+/Zn2+ transport systems, permease component
L1_007_122G1_scaffold_518_20
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15673..16416)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZHX6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ12184.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
znuC; putative ABC transporter ATP-binding protein
L1_007_122G1_scaffold_518_21
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16406..17356)
DNA (951bp) protein (317aa)
Periplasmic solute-binding family protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IDV1_9FIRM
Periplasmic solute-binding family protein {ECO:0000313|EMBL:CDE50009.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
ABC-type metal ion transporter, periplasmic subunit
L1_007_122G1_scaffold_518_22
unknown

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17557..18597
DNA (1041bp) protein (347aa)

This feature has no annotations

L1_007_122G1_scaffold_518_23
unknown

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18615..18782
DNA (168bp) protein (56aa)

This feature has no annotations

L1_007_122G1_scaffold_518_24
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18999..20072
DNA (1074bp) protein (358aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
ddl; D-alanine-D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5XZ71_9FIRM
L1_007_122G1_scaffold_518_25
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20113..20553
DNA (441bp) protein (147aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IUQ1_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDB41727.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
conserved hypothetical protein
L1_007_122G1_scaffold_518_26
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


20538..22232
DNA (1695bp) protein (565aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
argS; Arginine-tRNA ligase (EC:6.1.1.19)
Arginine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6ERW3_9FIRM
L1_007_122G1_scaffold_518_27
unknown

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comp(22317..22484)
DNA (168bp) protein (56aa)

This feature has no annotations

L1_007_122G1_scaffold_518_28
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22610..23116)
DNA (507bp) protein (169aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
aspartate kinase, monofunctional class (EC:2.7.2.4)
Aspartokinase n=1 Tax=Clostridium sp. CAG:217 RepID=R6JP07_9CLOT
Displaying 28 items

View Taxonomy