ggKbase home page

L1_007_122G1_scaffold_556

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_556_1
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..591)
DNA (591bp) protein (197aa)
gap; glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.-)
Glyceraldehyde 3-phosphate dehydrogenase n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9Y1M2_BIFBU
Glyceraldehyde-3-phosphate dehydrogenase, type I {ECO:0000313|EMBL:EPD75370.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_007_122G1_scaffold_556_2
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(826..1551)
DNA (726bp) protein (242aa)
Thiamine diphosphokinase n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2DTJ0_BIFBR
Thiamine diphosphokinase {ECO:0000313|EMBL:ERI84952.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Thiamin pyrophosphokinase
L1_007_122G1_scaffold_556_3
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2092..2898
DNA (807bp) protein (269aa)
translation initiation factor IF-3 n=1 Tax=Bifidobacterium breve RepID=UPI0003755512
Bacterial Protein Translation Initiation Factor 3 (IF-3)
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_007_122G1_scaffold_556_4
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


2879..3073
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=5 Tax=Bifidobacterium breve RepID=F6C8P3_BIFBA
LSU ribosomal protein L35P
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
L1_007_122G1_scaffold_556_5
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


3125..3508
DNA (384bp) protein (128aa)
50S ribosomal protein L20 n=5 Tax=Bifidobacterium breve RepID=F6C8P4_BIFBA
LSU ribosomal protein L20P
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L1_007_122G1_scaffold_556_6
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3579..4733
DNA (1155bp) protein (385aa)
Glycerate kinase {ECO:0000313|EMBL:EFE88240.1}; EC=2.7.1.31 {ECO:0000313|EMBL:EFE88240.1};; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
glycerate kinase n=1 Tax=Bifidobacterium breve RepID=UPI0002E071E5
glxK; Glycerate kinase
L1_007_122G1_scaffold_556_7
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4769..5698
DNA (930bp) protein (310aa)
Tyrosine recombinase XerD n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L0N6_BIFBR
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Integrase/recombinase (XerD/RipX family)
L1_007_122G1_scaffold_556_8
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5863..6762
DNA (900bp) protein (300aa)
Uncharacterized protein n=4 Tax=Bifidobacterium breve RepID=S2ZZB6_BIFBR
Chromosome partitioning protein parA
Uncharacterized protein {ECO:0000313|EMBL:EPD75377.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_007_122G1_scaffold_556_9
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6762..7613
DNA (852bp) protein (284aa)
ScpA/B protein n=3 Tax=Bifidobacterium breve RepID=D4BS30_BIFBR
Segregation and condensation protein ScpA
Segregation and condensation protein ScpA {ECO:0000313|EMBL:AHJ21392.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_007_122G1_scaffold_556_10
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7626..8300
DNA (675bp) protein (225aa)
Segregation and condensation protein B n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L0N9_BIFBR
Segregation and condensation protein ScpB
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L1_007_122G1_scaffold_556_11
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8434..9270
DNA (837bp) protein (279aa)
Phosphohydrolase (MutT/nudix family protein) n=4 Tax=Bifidobacterium breve RepID=F9Y1L1_BIFBU
Phosphohydrolase (MutT/nudix family protein)
Hydrolase, NUDIX family {ECO:0000313|EMBL:EFE88245.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_007_122G1_scaffold_556_12
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9323..10603
DNA (1281bp) protein (427aa)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00569}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00569};; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Quinolinate synthase A n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZG66_BIFBR
Quinolinate synthetase A
L1_007_122G1_scaffold_556_13
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10660..12264
DNA (1605bp) protein (535aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
nadB; L-aspartate oxidase (EC:1.4.3.16)
L-aspartate oxidase n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9Y1K9_BIFBU
L1_007_122G1_scaffold_556_14
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12268..13161
DNA (894bp) protein (298aa)
nadC; Nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase {ECO:0000313|EMBL:ABE95896.1}; EC=2.4.2.19 {ECO:0000313|EMBL:ABE95896.1};; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
Nicotinate-nucleotide pyrophosphorylase n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9Y1K8_BIFBU
L1_007_122G1_scaffold_556_15
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13164..14462
DNA (1299bp) protein (433aa)
Cysteine desulfurase {ECO:0000313|EMBL:ABE95895.1}; EC=2.8.1.7 {ECO:0000313|EMBL:ABE95895.1};; EC=4.4.1.- {ECO:0000313|EMBL:ABE95895.1};; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
Aminotransferase, class V n=2 Tax=Bifidobacterium breve RepID=F6C8Q6_BIFBA
Cysteine desulfurase
L1_007_122G1_scaffold_556_16
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14561..15910
DNA (1350bp) protein (450aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZLZ1_BIFBR
putative membrane spanning protein, MFS member
Putative membrane spanning protein, MFS member {ECO:0000313|EMBL:AHJ19585.1}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
L1_007_122G1_scaffold_556_17
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16015..19137)
DNA (3123bp) protein (1041aa)
Putative efflux ABC transporter, permease protein n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L0P6_BIFBR
putative membrane spanning protein, ABC-type permease
Putative membrane spanning protein, ABC-type permease {ECO:0000313|EMBL:AHJ21384.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_007_122G1_scaffold_556_18
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19134..19895)
DNA (762bp) protein (254aa)
ATP-binding protein of ABC transporter system n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9Y1K5_BIFBU
ATP-binding protein of ABC transporter system
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:AHJ21383.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_007_122G1_scaffold_556_19
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19912..20517)
DNA (606bp) protein (202aa)
Transcriptional regulator, PadR family n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2DTH3_BIFBR
Transcriptional regulator, PadR family {ECO:0000313|EMBL:ERI84932.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Transcriptional regulator, padR type
L1_007_122G1_scaffold_556_20
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21019..22758
DNA (1740bp) protein (580aa)
GTP-binding protein TypA n=2 Tax=Bifidobacterium breve RepID=D4BS41_BIFBR
GTP-binding protein TypA/BipA
GTP-binding protein {ECO:0000313|EMBL:BAR00251.1}; GTP-binding protein TypA {ECO:0000313|EMBL:EFE88254.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_007_122G1_scaffold_556_21
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22868..23332
DNA (465bp) protein (155aa)
Uncharacterized protein n=2 Tax=Bifidobacterium breve RepID=H3L0Q0_BIFBR
Conserved hypothetical membrane spanning protein
Conserved hypothetical membrane spanning protein {ECO:0000313|EMBL:ABE95890.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L1_007_122G1_scaffold_556_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23400..24371
DNA (972bp) protein (324aa)
Putative chorismate mutase n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L0Q1_BIFBR
Prephenate dehydratase
Chorismate mutase {ECO:0000313|EMBL:KEY26581.1}; TaxID=1457183 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis EK3.;"
L1_007_122G1_scaffold_556_23
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24365..25381
DNA (1017bp) protein (339aa)
Prephenate dehydrogenase n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BS44_BIFBR
Prephenate dehydrogenase
Prephenate dehydrogenase {ECO:0000313|EMBL:AHJ21378.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_007_122G1_scaffold_556_24
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25461..25724
DNA (264bp) protein (88aa)
Uncharacterized protein n=4 Tax=Bifidobacterium breve RepID=H3L0Q3_BIFBR
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPD75393.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_007_122G1_scaffold_556_25
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25977..28835)
DNA (2859bp) protein (953aa)
Efflux ABC transporter, permease protein n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BS46_BIFBR
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EFE88259.1}; Putative ABC transporter permease component {ECO:0000313|EMBL:BAR00246.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
efflux ABC transporter permease
L1_007_122G1_scaffold_556_26
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28832..29644)
DNA (813bp) protein (271aa)
ABC transporter, ATP-binding protein n=2 Tax=Bifidobacterium breve RepID=F6C8R7_BIFBA
ATP-binding protein of ABC transporter system
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AEF26424.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L1_007_122G1_scaffold_556_27
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29817..30836
DNA (1020bp) protein (340aa)
Tyrosine recombinase XerC n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9Y1B8_BIFBU
Integrase/recombinase
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L1_007_122G1_scaffold_556_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31090..31269
DNA (180bp) protein (60aa)
Extracellular solute-binding protein, family 5 n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUV8_BIFLJ
ABC transporter substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEY25565.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Displaying 28 items

View Taxonomy