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L1_007_122G1_scaffold_563

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_563_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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220..912
-----------------
DNA (693bp)
protein (231aa)
Transcriptional regulator, GntR family n=342 Tax=Enterobacteriaceae RepID=A7ZTW6_ECO24
yieP; transcriptional regulator
Bacterial regulatory s, gntR family protein {ECO:0000313|EMBL:END87684.1}; TaxID=1125642 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P0301867.13.;"
L1_007_122G1_scaffold_563_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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935..2362
-----------------
DNA (1428bp)
protein (476aa)
Drug resistance MFS transporter, drug:H+ antiporter-2 family n=3 Tax=Escherichia coli RepID=D7XYB0_ECOLX
Drug:H+ antiporter-2 (14 Spanner) (DHA2) family drug resistance MFS transporter {ECO:0000313|EMBL:ELD66346.1}; TaxID=1181778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE234.;"
hsrA; putative multidrug or homocysteine efflux system protein HsrA
L1_007_122G1_scaffold_563_3
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2328..3320)
-----------------
DNA (993bp)
protein (331aa)
Ribose operon repressor n=544 Tax=Enterobacteriaceae RepID=RBSR_ECO57
rbsR; transcriptional repressor RbsR
RbsR protein {ECO:0000313|EMBL:CEP59128.1}; TaxID=42897 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 2a.;"
L1_007_122G1_scaffold_563_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3324..4253)
-----------------
DNA (930bp)
protein (310aa)
ribokinase (EC:2.7.1.15)
Ribokinase {ECO:0000313|EMBL:EFK52947.1}; EC=2.7.1.15 {ECO:0000313|EMBL:EFK52947.1};; TaxID=679207 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 107-1.;"
Ribokinase n=95 Tax=Enterobacteriaceae RepID=B5YY10_ECO5E
L1_007_122G1_scaffold_563_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4379..5269)
-----------------
DNA (891bp)
protein (297aa)
D-ribose periplasmic binding protein n=1147 Tax=Enterobacteriaceae RepID=C3SL12_ECOLX
D-ribose transporter subunit RbsB
D-ribose-binding periplasmic protein {ECO:0000313|EMBL:ELI20803.1}; TaxID=1169376 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE112.;"
L1_007_122G1_scaffold_563_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5294..6259)
-----------------
DNA (966bp)
protein (322aa)
Ribose transport system permease protein RbsC n=1343 Tax=Enterobacteriaceae RepID=RBSC_ECO57
rbsC; high-affinity ribose transport system permease protein RbsC
Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:KDY60301.1}; TaxID=1444184 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-460-02_S3_C3.;"
L1_007_122G1_scaffold_563_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6264..7769)
-----------------
DNA (1506bp)
protein (502aa)
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; TaxID=1116070 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P0301867.7.;"
Ribose ABC transporter, ATP-binding protein n=129 Tax=Escherichia coli RepID=A8A6L2_ECOHS
rbsA; D-ribose transporter ATP-binding protein
L1_007_122G1_scaffold_563_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7777..8196)
-----------------
DNA (420bp)
protein (140aa)
D-ribose pyranase {ECO:0000256|HAMAP-Rule:MF_01661, ECO:0000256|SAAS:SAAS00011477}; EC=5.4.99.62 {ECO:0000256|HAMAP-Rule:MF_01661, ECO:0000256|SAAS:SAAS00166232};; TaxID=656419 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M718.;"
D-ribose pyranase n=464 Tax=Enterobacteriaceae RepID=RBSD_ECO55
rbsD; D-ribose pyranase
L1_007_122G1_scaffold_563_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8363..10231)
-----------------
DNA (1869bp)
protein (623aa)
Low affinity potassium transport system protein kup n=924 Tax=Enterobacteriaceae RepID=KUP_ECO24
potassium uptake protein
Low affinity potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; Kup system potassium uptake protein {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1169376 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE112.;"
L1_007_122G1_scaffold_563_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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10454..11950
-----------------
DNA (1497bp)
protein (499aa)
ATPase RavA {ECO:0000256|HAMAP-Rule:MF_01625}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01625};; Regulatory ATPase variant A {ECO:0000256|HAMAP-Rule:MF_01625}; TaxID=1444127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-474-04_S3_C1.;"
ATPase RavA n=256 Tax=Enterobacteriaceae RepID=RAVA_ECOBW
yieN; fused putative transcriptional regulator: sigma54 activator protein/hypothetical protein
L1_007_122G1_scaffold_563_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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11944..13395
-----------------
DNA (1452bp)
protein (484aa)
Protein ViaA n=554 Tax=Enterobacteriaceae RepID=VIAA_ECO57
hypothetical protein
Protein ViaA {ECO:0000256|HAMAP-Rule:MF_01626, ECO:0000256|SAAS:SAAS00012203}; VWA domain protein interacting with AAA ATPase {ECO:0000256|HAMAP-Rule:MF_01626}; TaxID=1169340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE21.;"
L1_007_122G1_scaffold_563_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13400..14392)
-----------------
DNA (993bp)
protein (331aa)
asnA; aspartate--ammonia ligase (asparagine synthetase A) (EC:6.3.1.1)
Aspartate--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088413}; EC=6.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088403};; Asparagine synthetase A {ECO:0000256|HAMAP-Rule:MF_00555}; TaxID=1444185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-474-04_S3_C3.;"
Aspartate--ammonia ligase n=240 Tax=Escherichia RepID=ASNA_ECO81
L1_007_122G1_scaffold_563_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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14544..15002
-----------------
DNA (459bp)
protein (153aa)
Regulatory protein AsnC n=1413 Tax=Enterobacteriaceae RepID=ASNC_ECO57
hypothetical protein
Regulatory protein AsnC {ECO:0000313|EMBL:KEJ54808.1}; TaxID=1444220 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S4_C1.;"
L1_007_122G1_scaffold_563_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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15092..15535
-----------------
DNA (444bp)
protein (148aa)
Protein MioC n=109 Tax=Escherichia RepID=MIOC_ECOLI
mioC; FMN-binding protein MioC
Protein mioC {ECO:0000313|EMBL:ELD66334.1}; TaxID=1181778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE234.;"
L1_007_122G1_scaffold_563_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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15914..17803
-----------------
DNA (1890bp)
protein (630aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=815 Tax=Enterobacteriaceae RepID=MNMG_ECO24
glucose inhibited division protein A
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1444127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-474-04_S3_C1.;"
L1_007_122G1_scaffold_563_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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17867..18490
-----------------
DNA (624bp)
protein (208aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=550672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B088.;"
Ribosomal RNA small subunit methyltransferase G n=1222 Tax=Enterobacteriaceae RepID=RSMG_ECO27
gidB; methyltransferase GidB
L1_007_122G1_scaffold_563_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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19107..19487
-----------------
DNA (381bp)
protein (127aa)
ATP F0F1 synthase subunit I {ECO:0000313|EMBL:EZE09775.1}; EC=3.6.3.14 {ECO:0000313|EMBL:EZE09775.1};; TaxID=1446753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O69:H11 str. 08-4661.;"
UPI0003D5A811 related cluster n=1 Tax=unknown RepID=UPI0003D5A811
atpI; membrane-bound ATP synthase
L1_007_122G1_scaffold_563_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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19496..20311
-----------------
DNA (816bp)
protein (272aa)
F0F1 ATP synthase subunit A (EC:3.6.3.14)
ATP synthase subunit a n=835 Tax=Enterobacteriaceae RepID=ATP6_ECO24
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=1444212 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S4_C1.;"
L1_007_122G1_scaffold_563_19
Serratia symbiotica, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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20358..20501
-----------------
DNA (144bp)
protein (48aa)
ATP synthase F0 subunit C (EC:3.6.3.14)
ATP synthase subunit c n=10 Tax=Enterobacteriaceae RepID=ATPL_PROMH
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242778, ECO:0000313|EMBL:CDG48494.1}; TaxID=1347341 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia; Serratia symbiotica.;" source="Serratia symbiotica SCt-VLC.;"
L1_007_122G1_scaffold_563_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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20563..21033
-----------------
DNA (471bp)
protein (157aa)
ATP synthase subunit b n=1428 Tax=cellular organisms RepID=ATPF_ECO24
atpF; ATP synthase F0, B subunit AtpF
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398, ECO:0000256|RuleBase:RU003849}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=749540 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 146-1.;"
L1_007_122G1_scaffold_563_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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21046..21483
-----------------
DNA (438bp)
protein (146aa)
ATP synthase subunit delta n=5 Tax=Escherichia coli RepID=D7XYC9_ECOLX
atpH; ATP synthase subunit delta
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=1182699 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE100.;"
L1_007_122G1_scaffold_563_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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21593..22807
-----------------
DNA (1215bp)
protein (405aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=869686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 9.0111.;"
ATP synthase subunit alpha n=1 Tax=Escherichia coli BCE006_MS-23 RepID=N3KJ89_ECOLX
atpA; F1 sector of membrane-bound ATP synthase, alpha subunit
Displaying 22 items

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