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L1_007_122G1_scaffold_564

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_564_1
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..1096)
DNA (1095bp) protein (365aa)
Chromosome partition protein Smc n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6EFS2_9FIRM
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
chromosome segregation protein SMC
L1_007_122G1_scaffold_564_2
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1183..2199)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MIT8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY91635.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
radical SAM protein
L1_007_122G1_scaffold_564_3
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2196..2882)
DNA (687bp) protein (229aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
rnc; Ribonuclease 3 (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DMR2_9FIRM
L1_007_122G1_scaffold_564_4
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2938..3945)
DNA (1008bp) protein (336aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
plsX; putative glycerol-3-phosphate acyltransferase PlsY (together with PlsY) (EC:2.3.1.15)
Phosphate acyltransferase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I8E1_9FIRM
L1_007_122G1_scaffold_564_5
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3989..5311)
DNA (1323bp) protein (441aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037};; Folate-dependent tRNA (uracil-5-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; Folate-dependent tRNA(M-5-U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5Y6D2_9FIRM
tRNA:m(5)U-54 methyltransferase
L1_007_122G1_scaffold_564_6
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5333..7480)
DNA (2148bp) protein (716aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DK40_9FIRM
L1_007_122G1_scaffold_564_7
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7606..8814)
DNA (1209bp) protein (403aa)
DNA protecting protein DprA n=1 Tax=Eubacterium sp. CAG:180 RepID=R5N371_9FIRM
DNA protecting protein DprA {ECO:0000313|EMBL:CCY91642.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
hypothetical protein
L1_007_122G1_scaffold_564_8
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8859..9650)
DNA (792bp) protein (264aa)
RNA methyltransferase TrmH family n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HXC9_9FIRM
RNA methyltransferase TrmH family {ECO:0000313|EMBL:CDB41700.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
tRNA/rRNA methyltransferase SpoU
L1_007_122G1_scaffold_564_9
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9731..10087)
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=1 Tax=Clostridium sp. CAG:413 RepID=R6NTL4_9CLOT
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
50S ribosomal protein L20
L1_007_122G1_scaffold_564_10
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10132..10329)
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MIU6_9FIRM
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
LSU ribosomal protein L35P
L1_007_122G1_scaffold_564_11
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10347..10958)
DNA (612bp) protein (204aa)
Translation initiation factor IF-3 n=1 Tax=Clostridium leptum CAG:27 RepID=R6MY94_9CLOT
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
translation initiation factor IF-3
L1_007_122G1_scaffold_564_12
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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11369..12361
DNA (993bp) protein (331aa)
Peptidase S15 n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GAV7_9FIRM
Peptidase S15 {ECO:0000313|EMBL:EFW04773.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
Abhydrolase domain-containing protein
L1_007_122G1_scaffold_564_13
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12455..13354)
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LX22_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS63108.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
radical SAM protein
L1_007_122G1_scaffold_564_14
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13447..13725)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9M5G1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS63107.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
L1_007_122G1_scaffold_564_15
Paenibacillus macerans, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(13788..14726)
DNA (939bp) protein (313aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX12_9FIRM
DeoR-like helix-turn-helix domain protein {ECO:0000313|EMBL:KFN07992.1}; TaxID=44252 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus macerans (Bacillus macerans).;"
transcriptional regulator DeoR family
L1_007_122G1_scaffold_564_16
Anaerotruncus sp. CAG:528, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15120..18167)
DNA (3048bp) protein (1016aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=1262700 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:528.;"
Beta-galactosidase n=1 Tax=Anaerotruncus sp. CAG:528 RepID=R5XDE8_9FIRM
beta-galactosidase
L1_007_122G1_scaffold_564_17
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18399..19013)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6P001_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC11851.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
capM; capsular polysaccharide synthesis enzyme
L1_007_122G1_scaffold_564_18
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19184..19789)
DNA (606bp) protein (202aa)
Putative cyclase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I6K7_9FIRM
Putative cyclase {ECO:0000313|EMBL:CDB42109.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
cyclase family protein
L1_007_122G1_scaffold_564_19
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19860..20396)
DNA (537bp) protein (179aa)
Putative ABC transporter peremase protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NWF9_9CLOT
Putative ABC transporter peremase protein {ECO:0000313|EMBL:CDC10591.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
Displaying 19 items

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