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L1_007_122G1_scaffold_602

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_602_1
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(181..957)
DNA (777bp) protein (259aa)
DNA-binding helix-turn-helix protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P0Y3_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDM98004.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
transcriptional regulator, XRE family
L1_007_122G1_scaffold_602_2
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1071..1532)
DNA (462bp) protein (154aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
Peptide deformylase n=1 Tax=Clostridium termitidis CT1112 RepID=S0FFJ4_9CLOT
peptide deformylase
L1_007_122G1_scaffold_602_3
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1861..2094)
DNA (234bp) protein (78aa)
UPF0109 protein BN517_01235 n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HVV2_9FIRM
UPF0109 protein BN517_01235 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
RNA-binding protein (KH domain)
L1_007_122G1_scaffold_602_4
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2123..2368)
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037AB3E4
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
rpsP; ribosomal protein S16
L1_007_122G1_scaffold_602_5
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2464..3816)
DNA (1353bp) protein (451aa)
Signal recognition particle protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IT33_9FIRM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
ffh; Signal recognition particle protein
L1_007_122G1_scaffold_602_6
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3830..4195)
DNA (366bp) protein (122aa)
Transcriptional regulator YlxM/p13 family n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HTG7_9FIRM
UPF0122 protein BN517_01238 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L1_007_122G1_scaffold_602_7
unknown

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comp(4359..4487)
DNA (129bp) protein (43aa)

This feature has no annotations

L1_007_122G1_scaffold_602_8
Paenibacillus sp. P22, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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4836..9368
DNA (4533bp) protein (1511aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5R397_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDN42563.1}; TaxID=483908 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. P22.;"
hypothetical protein
L1_007_122G1_scaffold_602_9
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9503..13012
DNA (3510bp) protein (1170aa)
M26 IgA1-specific metallo-endopeptidase C-terminal domain protein n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DWN1_9FIRM
M26 IgA1-specific metallo-endopeptidase C-terminal domain protein {ECO:0000313|EMBL:CDA88676.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
hypothetical protein
L1_007_122G1_scaffold_602_10
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13283..14020
DNA (738bp) protein (246aa)
Probable transcriptional regulatory protein BN517_01221 n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I6W0_9FIRM
Probable transcriptional regulatory protein BN517_01221 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L1_007_122G1_scaffold_602_11
unknown

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14160..14780
DNA (621bp) protein (207aa)

This feature has no annotations

L1_007_122G1_scaffold_602_12
Butyrivibrio sp. CAG:318, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15184..16143)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Butyrivibrio sp. CAG:318 RepID=R6QHZ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC36258.1}; TaxID=1262761 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio sp. CAG:318.;"
hypothetical protein
L1_007_122G1_scaffold_602_13
Paenibacillus sp. FSL R7-277, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16249..18192)
DNA (1944bp) protein (648aa)
Carbamoyltransferase n=2 Tax=Paenibacillus RepID=F5LDJ4_9BACL
Uncharacterized protein {ECO:0000313|EMBL:ETT65420.1}; TaxID=1227352 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R7-277.;"
nol; hypothetical protein
L1_007_122G1_scaffold_602_14
Syntrophobotulus glycolicus, Syntrophobotulus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18189..18851)
DNA (663bp) protein (221aa)
Glycosyl transferase family 2 n=1 Tax=Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) RepID=F0SXP8_SYNGF
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ADY55881.1}; TaxID=645991 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Syntrophobotulus.;" source="Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR).;"
Displaying 14 items

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