ggKbase home page

L1_007_122G1_scaffold_625

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_625_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..945)
DNA (945bp) protein (315aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
CTP synthase n=2 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GS94_BIFLS
CTP synthase
L1_007_122G1_scaffold_625_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(999..1445)
DNA (447bp) protein (149aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase n=4 Tax=Bifidobacterium RepID=C2GTK2_BIFLN
L1_007_122G1_scaffold_625_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1608..3230)
DNA (1623bp) protein (541aa)
3-dehydroquinate synthase {ECO:0000313|EMBL:CCK34864.1}; EC=4.2.3.4 {ECO:0000313|EMBL:CCK34864.1};; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
3-dehydroquinate synthase n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2I0L4_BIFLN
shikimate kinase/3-dehydroquinate synthase
L1_007_122G1_scaffold_625_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3313..3837)
DNA (525bp) protein (175aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Chorismate synthase n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZTY4_BIFLJ
chorismate synthase
L1_007_122G1_scaffold_625_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3834..4307)
DNA (474bp) protein (158aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
Chorismate synthase n=1 Tax=Bifidobacterium longum E18 RepID=V6XXY5_BIFLN
chorismate synthase
L1_007_122G1_scaffold_625_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4371..4844
DNA (474bp) protein (158aa)
Peptidase A24A, prepilin type IV n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GS98_BIFLS
hypothetical protein
Peptidase A24A, prepilin type IV {ECO:0000313|EMBL:ACJ52678.1}; TaxID=391904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088; / JCM 1222 / NCTC 11817 / S12).;"
L1_007_122G1_scaffold_625_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4985..6166)
DNA (1182bp) protein (394aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum E18 RepID=V6Y0I7_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:KEY31983.1}; TaxID=1457183 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis EK3.;"
aminodeoxychorismate lyase
L1_007_122G1_scaffold_625_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6180..6635)
DNA (456bp) protein (152aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
Putative Holliday junction resolvase n=8 Tax=Bifidobacterium RepID=RUVX_BIFLD
endonuclease for recombination
L1_007_122G1_scaffold_625_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(6644..9325)
DNA (2682bp) protein (894aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Alanine--tRNA ligase n=11 Tax=Bifidobacterium RepID=SYA_BIFLO
alanyl-tRNA synthase
L1_007_122G1_scaffold_625_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9453..9689)
DNA (237bp) protein (79aa)
Uncharacterized protein n=16 Tax=Bifidobacterium RepID=B3DSE4_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD98063.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_007_122G1_scaffold_625_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9689..10087)
DNA (399bp) protein (133aa)
Uncharacterized protein n=18 Tax=Bifidobacterium RepID=B3DSE5_BIFLD
hypothetical protein
PF06103 family protein {ECO:0000313|EMBL:EIJ24477.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L1_007_122G1_scaffold_625_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10290..11018)
DNA (729bp) protein (243aa)
Uncharacterized protein n=18 Tax=Bifidobacterium RepID=Q8G5W7_BIFLO
hypothetical protein
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:EEI81418.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L1_007_122G1_scaffold_625_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11144..12049
DNA (906bp) protein (302aa)
Acyltransferase n=3 Tax=Bifidobacterium RepID=E5XXD1_9BIFI
Acyltransferase {ECO:0000313|EMBL:KEY22105.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
hypothetical protein
L1_007_122G1_scaffold_625_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12113..13108
DNA (996bp) protein (332aa)
Acyltransferase family protein n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2I305_BIFLN
hypothetical protein
Acyltransferase {ECO:0000313|EMBL:KEY32827.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L1_007_122G1_scaffold_625_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(13199..13825)
DNA (627bp) protein (209aa)
30S ribosomal protein S4 n=20 Tax=Bifidobacterium RepID=RS4_BIFLD
30S ribosomal protein S4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1035817 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum KACC 91563.;"
L1_007_122G1_scaffold_625_16
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14024..14992)
DNA (969bp) protein (323aa)
ABC transporter n=1 Tax=Bifidobacterium sp. 12_1_47BFAA RepID=E5XXD4_9BIFI
ABC transporter {ECO:0000313|EMBL:EFV37760.1}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
abc-type transport system for lysophospholipase l1 biosynthesis atpase component
L1_007_122G1_scaffold_625_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14994..16211)
DNA (1218bp) protein (406aa)
ABC transporter permease n=8 Tax=Bifidobacterium longum RepID=F8AQU4_BIFLN
ABC transporter permease
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EEI81422.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L1_007_122G1_scaffold_625_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16302..16700)
DNA (399bp) protein (133aa)
Uncharacterized protein n=17 Tax=Bifidobacterium RepID=B3DSF3_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEY32823.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L1_007_122G1_scaffold_625_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16845..19577)
DNA (2733bp) protein (911aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
Putative ATP-dependent DNA helicase PcrA n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GTL7_BIFLN
ATP-dependent DNA helicase PcrA
L1_007_122G1_scaffold_625_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19664..20245
DNA (582bp) protein (194aa)
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502}; Short=XPRTase {ECO:0000256|HAMAP-Rule:MF_01184};; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502};; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Xanthine phosphoribosyltransferase n=17 Tax=Bifidobacterium RepID=XPT_BIFLD
apt2; apt2
L1_007_122G1_scaffold_625_21
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20296..21660
DNA (1365bp) protein (455aa)
Xanthine/uracil permease n=2 Tax=Bifidobacterium RepID=B3DSF6_BIFLD
uraA1; Xanthine/uracil permease
Xanthine permease {ECO:0000313|EMBL:EFV37765.1}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
Displaying 21 items

View Taxonomy