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L1_007_122G1_scaffold_628

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Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_628_1
unknown

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comp(3..65)
DNA (63bp) protein (21aa)
L1_007_122G1_scaffold_628_2
Escherichia sp. KTE159, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(106..1095)
DNA (990bp) protein (330aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1182732 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE159.;"
DNA-directed RNA polymerase subunit alpha n=1911 Tax=Enterobacteriaceae RepID=RPOA_CITK8
L1_007_122G1_scaffold_628_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1121..1741)
DNA (621bp) protein (207aa)
30S ribosomal protein S4 n=1016 Tax=Enterobacteriaceae RepID=RS4_CITK8
SSU ribosomal protein S4P
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=656429 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli TA007.;"
L1_007_122G1_scaffold_628_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1775..2164)
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=1412 Tax=Enterobacteriaceae RepID=RS11_ECO24
rpsK; 30S ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=749532 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 78-1.;"
L1_007_122G1_scaffold_628_5
Shigella boydii, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2181..2537)
DNA (357bp) protein (119aa)
30S ribosomal protein S13 n=1379 Tax=Enterobacteriaceae RepID=RS13_ECO57
rpsM; 30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=766138 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella boydii 965-58.;"
L1_007_122G1_scaffold_628_6
Klebsiella sp. OBRC7, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2684..2800)
DNA (117bp) protein (39aa)
50S ribosomal protein L36 1 n=1875 Tax=Enterobacteriaceae RepID=RL361_CROS8
LSU ribosomal protein L36P
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=936565 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella sp. OBRC7.;"
L1_007_122G1_scaffold_628_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2832..4163)
DNA (1332bp) protein (444aa)
Protein translocase subunit SecY n=1381 Tax=Enterobacteriaceae RepID=SECY_ECO57
secY; preprotein translocase subunit SecY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
L1_007_122G1_scaffold_628_8
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4171..4443)
DNA (273bp) protein (91aa)
50S ribosomal protein L15 n=1 Tax=Escherichia coli P0301867.3 RepID=N4NFG3_ECOLX
rplO; 50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=997334 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella enterica subsp. enterica serovar Oranienburg str. 701.;"
L1_007_122G1_scaffold_628_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4599..4778)
DNA (180bp) protein (60aa)
50S ribosomal protein L30 n=1450 Tax=Enterobacteriaceae RepID=RL30_ECO24
rpmD; 50S ribosomal protein L30
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00032272}; TaxID=1444102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C3.;"
L1_007_122G1_scaffold_628_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4782..5285)
DNA (504bp) protein (168aa)
30S ribosomal protein S5 n=2034 Tax=Enterobacteriaceae RepID=RS5_CITK8
rpsE; 30S ribosomal protein S5
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1001989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli PCN033.;"
L1_007_122G1_scaffold_628_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5300..5653)
DNA (354bp) protein (118aa)
50S ribosomal protein L18 n=1600 Tax=Bacteria RepID=RL18_CITK8
50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1182680 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE73.;"
L1_007_122G1_scaffold_628_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5663..6196)
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=1402 Tax=Enterobacteriaceae RepID=RL6_ECO24
ribosomal protein
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=869688 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2.3916.;"
L1_007_122G1_scaffold_628_13
Escherichia sp. KTE52, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6209..6601)
DNA (393bp) protein (131aa)
30S ribosomal protein S8 n=1992 Tax=Enterobacteriaceae RepID=RS8_CITK8
rpsH; 30S ribosomal protein S8
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1182659 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE52.;"
L1_007_122G1_scaffold_628_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6635..6940)
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1408 Tax=Enterobacteriaceae RepID=RS14_ECO24
rpsN; 30S ribosomal protein S14
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1444252 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-373-03_S4_C2.;"
L1_007_122G1_scaffold_628_15
Klebsiella pneumoniae, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6955..7494)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1584 Tax=Bacteria RepID=RL5_ECO24
rplE; 50S ribosomal protein L5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1432552 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella pneumoniae IS43.;"
L1_007_122G1_scaffold_628_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7509..7823)
DNA (315bp) protein (105aa)
50S ribosomal protein L24 n=1734 Tax=Bacteria RepID=RL24_CROS8
rplX; 50S ribosomal protein L24
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1446581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O128:H2 str. 2011C-3317.;"
L1_007_122G1_scaffold_628_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7834..8205)
DNA (372bp) protein (124aa)
50S ribosomal protein L14 n=1446 Tax=Enterobacteriaceae RepID=RL14_ECO24
rplN; 50S ribosomal protein L14
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1182658 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE51.;"
L1_007_122G1_scaffold_628_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8370..8624)
DNA (255bp) protein (85aa)
30S ribosomal protein S17 n=1461 Tax=Enterobacteriaceae RepID=RS17_CROS8
rpsQ; 30S ribosomal protein S17
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=910348 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P12b.;"
L1_007_122G1_scaffold_628_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8624..8815)
DNA (192bp) protein (64aa)
50S ribosomal protein L29 n=1412 Tax=Enterobacteriaceae RepID=RL29_ECO24
rpmC; 50S ribosomal protein L29
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1005550 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli EC1865.;"
L1_007_122G1_scaffold_628_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8815..9225)
DNA (411bp) protein (137aa)
50S ribosomal protein L16 n=1441 Tax=Enterobacteriaceae RepID=RL16_CITK8
rplP; 50S ribosomal protein L16
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1444155 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-460-02_S3_C2.;"
L1_007_122G1_scaffold_628_21
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9238..9939)
DNA (702bp) protein (234aa)
30S ribosomal protein S3 n=2042 Tax=Enterobacteriaceae RepID=RS3_CITK8
30S ribosomal protein S3
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=687914 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella enterica subsp. enterica serovar Rissen str. 150.;"
L1_007_122G1_scaffold_628_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9957..10289)
DNA (333bp) protein (111aa)
50S ribosomal protein L22 n=1956 Tax=Enterobacteriaceae RepID=RL22_CITK8
rplV; 50S ribosomal protein L22
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=868136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC1D.;"
L1_007_122G1_scaffold_628_23
Escherichia sp. KTE114, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10365..10514)
DNA (150bp) protein (50aa)
30S ribosomal protein S19 n=1 Tax=Escherichia coli ECA-727 RepID=V6PE63_ECOLX
rpsS; 30S ribosomal protein S19
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1169321 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE114.;"
L1_007_122G1_scaffold_628_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10531..11352)
DNA (822bp) protein (274aa)
50S ribosomal protein L2 n=1397 Tax=Enterobacteriaceae RepID=RL2_ECO24
rplB; 50S ribosomal protein L2
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1444163 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-250-04_S3_C2.;"
L1_007_122G1_scaffold_628_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11370..11672)
DNA (303bp) protein (101aa)
50S ribosomal protein L23 n=1424 Tax=Enterobacteriaceae RepID=RL23_ECO57
rplW; 50S ribosomal protein L23
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=1182699 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE100.;"
L1_007_122G1_scaffold_628_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11669..12274)
DNA (606bp) protein (202aa)
50S ribosomal protein L4 n=2030 Tax=Enterobacteriaceae RepID=RL4_CITK8
rplD; 50S ribosomal protein L4
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1169376 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE112.;"
L1_007_122G1_scaffold_628_27
Shigella boydii, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12285..12854)
DNA (570bp) protein (190aa)
50S ribosomal protein L3 n=5 Tax=Shigella sonnei RepID=E7K5U2_SHISO
rplC; 50S ribosomal protein L3
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=766141 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella boydii 5216-82.;"
L1_007_122G1_scaffold_628_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12887..13198)
DNA (312bp) protein (104aa)
30S ribosomal protein S10 n=1436 Tax=Enterobacteriaceae RepID=RS10_ECO24
rpsJ; 30S ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1281241 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3323-1.;"
L1_007_122G1_scaffold_628_29

Not on your lists

13261..13467
DNA (207bp) protein (69aa)
Uncharacterized protein {ECO:0000313|EMBL:ETJ19021.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_122G1_scaffold_628_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13436..13855)
DNA (420bp) protein (140aa)
Putative general secretion pathway protein B n=159 Tax=Escherichia RepID=GSPB_ECOLI
hypothetical protein
Protein pioO {ECO:0000313|EMBL:EMX17670.1}; TaxID=1116066 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P0301867.1.;"
Displaying items 1-30 of 47 in total

View Taxonomy