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L1_007_122G1_scaffold_794

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_794_1
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2..409
-----------------
DNA (408bp)
protein (136aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
3-isopropylmalate dehydratase large subunit n=2 Tax=Bifidobacterium breve RepID=D4BQB1_BIFBR
3-isopropylmalate dehydratase large subunit
L1_007_122G1_scaffold_794_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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495..1028
-----------------
DNA (534bp)
protein (178aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
3-isopropylmalate dehydratase small subunit n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3AWB7_BIFLN
isopropylmalate isomerase small subunit
L1_007_122G1_scaffold_794_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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1513..1806
-----------------
DNA (294bp)
protein (98aa)
Dihydroorotate dehydrogenase n=1 Tax=Bifidobacterium longum (strain DJO10A) RepID=B3DPI4_BIFLD
dihydroorotate dehydrogenase
Uncharacterized protein {ECO:0000313|EMBL:AAN25066.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L1_007_122G1_scaffold_794_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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1836..2270
-----------------
DNA (435bp)
protein (145aa)
Dihydroorotate oxidase {ECO:0000313|EMBL:EEI80415.1}; EC=1.3.98.1 {ECO:0000313|EMBL:EEI80415.1};; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
Dihydroorotate oxidase n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GWM0_BIFLN
dihydroorotate dehydrogenase
L1_007_122G1_scaffold_794_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2317..2502
-----------------
DNA (186bp)
protein (62aa)
Dihydroorotate oxidase n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5NE31_9BIFI
putative dihydroorotate dehydrogenase
Diguanylate cyclase {ECO:0000313|EMBL:KEY20643.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L1_007_122G1_scaffold_794_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(2709..4013)
-----------------
DNA (1305bp)
protein (435aa)
Uncharacterized NAD(FAD)-dependent dehydrogenases n=15 Tax=Bifidobacterium RepID=D6DCE8_BIFLN
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:ADH01271.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L1_007_122G1_scaffold_794_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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4263..5588
-----------------
DNA (1326bp)
protein (442aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|SAAS:SAAS00085344};; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
UDP-N-acetylglucosamine enolpyruvyl transferase n=14 Tax=Bifidobacterium RepID=B3DPI6_BIFLD
murA; mura
L1_007_122G1_scaffold_794_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(5637..6884)
-----------------
DNA (1248bp)
protein (416aa)
Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities n=8 Tax=Bifidobacterium RepID=D6DCE7_BIFLN
aminotransferase
Probable aminotransferase {ECO:0000313|EMBL:AAN25069.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L1_007_122G1_scaffold_794_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(6984..7916)
-----------------
DNA (933bp)
protein (311aa)
LysR substrate-binding domain protein n=1 Tax=Bifidobacterium longum subsp. longum 44B RepID=I3BD94_BIFLN
LysR substrate-binding domain protein {ECO:0000313|EMBL:EIJ29337.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
LysR-type transcriptional regulator
L1_007_122G1_scaffold_794_10
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(8003..9280)
-----------------
DNA (1278bp)
protein (426aa)
Major Facilitator Superfamily n=3 Tax=Bifidobacterium RepID=D6DCE5_BIFLN
Major Facilitator Superfamily.
Major Facilitator Superfamily {ECO:0000313|EMBL:CCY95422.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_007_122G1_scaffold_794_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(9277..9942)
-----------------
DNA (666bp)
protein (222aa)
AcrR-type transcriptional regulator n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4R2J6_BIFLM
Putative transcriptional regulator {ECO:0000313|EMBL:BAP84364.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
acrr-type transcriptional regulator
L1_007_122G1_scaffold_794_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


10156..12018
-----------------
DNA (1863bp)
protein (621aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
Arginine--tRNA ligase n=8 Tax=Bifidobacterium RepID=D6DCE3_BIFLN
argS; args
L1_007_122G1_scaffold_794_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12021..13613
-----------------
DNA (1593bp)
protein (531aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120};; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
Diaminopimelate decarboxylase n=3 Tax=Bifidobacterium longum RepID=Q8G4V1_BIFLO
lysA; diaminopimelate decarboxylase
L1_007_122G1_scaffold_794_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13773..15089
-----------------
DNA (1317bp)
protein (439aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
Homoserine dehydrogenase n=3 Tax=Bifidobacterium RepID=V6Y0W3_BIFLN
thrA; homoserine dehydrogenase
L1_007_122G1_scaffold_794_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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15095..16108
-----------------
DNA (1014bp)
protein (338aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Homoserine kinase n=5 Tax=Bifidobacterium RepID=B3DPJ4_BIFLD
homoserine kinase
L1_007_122G1_scaffold_794_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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16120..17325
-----------------
DNA (1206bp)
protein (402aa)
Maf n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4R2K1_BIFLM
maf; maf
Septum formation protein Maf {ECO:0000313|EMBL:KEY32221.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L1_007_122G1_scaffold_794_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17418..18149
-----------------
DNA (732bp)
protein (244aa)
ABC transporter ATP-binding component n=4 Tax=Bifidobacterium RepID=E8MFE3_BIFL2
ABC-type antimicrobial peptide transport system, ATPase component
ABC transporter ATP-binding component {ECO:0000313|EMBL:BAJ67420.1}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
L1_007_122G1_scaffold_794_18
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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18325..19506
-----------------
DNA (1182bp)
protein (394aa)
Transport protein n=9 Tax=Bifidobacterium RepID=F8ARQ2_BIFLN
transporter
Putative transport protein {ECO:0000313|EMBL:CCY95415.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
Displaying 18 items

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