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L1_007_122G1_scaffold_812

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_812_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..588)
DNA (588bp) protein (196aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
Dihydroxy-acid dehydratase n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=ILVD_BIFLO
Dihydroxy-acid dehydratase
L1_007_122G1_scaffold_812_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

910..1134
DNA (225bp) protein (75aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
DNA-directed RNA polymerase subunit omega n=1 Tax=Bifidobacterium longum subsp. longum 1-6B RepID=I3B307_BIFLN
DNA-directed RNA polymerase omega subunit
L1_007_122G1_scaffold_812_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1412..2632
DNA (1221bp) protein (407aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
S-adenosylmethionine synthase n=2 Tax=Bifidobacterium RepID=I3BHZ7_BIFLN
metK; metk
L1_007_122G1_scaffold_812_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2700..5987)
DNA (3288bp) protein (1096aa)
Type I site-specific deoxyribonuclease, HsdR family {ECO:0000313|EMBL:EEI80539.1}; EC=3.1.21.3 {ECO:0000313|EMBL:EEI80539.1};; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
Type I site-specific deoxyribonuclease, HsdR family n=2 Tax=Bifidobacterium longum subsp. longum RepID=C2GVT4_BIFLN
deoxyribonuclease
L1_007_122G1_scaffold_812_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5984..7501)
DNA (1518bp) protein (506aa)
Putative transcriptional regulator n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WIF6_BIFBI
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AFL04669.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_007_122G1_scaffold_812_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7516..8793)
DNA (1278bp) protein (426aa)
Type I restriction modification DNA specificity domain protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G8T9_9ACTN
Type I restriction-modification system DNA specificity domain protein {ECO:0000313|EMBL:BAP84065.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
hypothetical protein
L1_007_122G1_scaffold_812_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8989..12300)
DNA (3312bp) protein (1104aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
ileS; isoleucyl-tRNA synthase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3B100_BIFLN
L1_007_122G1_scaffold_812_8
unknown

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12350..12772
DNA (423bp) protein (141aa)

This feature has no annotations

L1_007_122G1_scaffold_812_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12762..13745
DNA (984bp) protein (328aa)
Aminotransferase, class I/II n=1 Tax=Bifidobacterium longum subsp. longum 1-6B RepID=I3BCF7_BIFLN
aspartate aminotransferase
Aspartate aminotransferase {ECO:0000313|EMBL:AIW44123.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L1_007_122G1_scaffold_812_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13868..14320
DNA (453bp) protein (151aa)
Beta-galactosidase {ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|SAAS:SAAS00046613};; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
Beta galactosidase small chain domain protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3B0W4_BIFLN
truncated beta-galactosidase
L1_007_122G1_scaffold_812_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14380..15390)
DNA (1011bp) protein (337aa)
Transcriptional regulator n=2 Tax=Bifidobacterium longum RepID=E8MEM7_BIFL2
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:BAJ67154.1}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
Displaying 11 items

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