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L1_007_122G1_scaffold_822

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_822_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..123)
DNA (123bp) protein (41aa)
30S ribosomal protein S2 n=4 Tax=Bifidobacterium RepID=RS2_BIFAA
rpsB; 30S ribosomal protein S2
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1457183 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis EK3.;"
L1_007_122G1_scaffold_822_2
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(481..969)
DNA (489bp) protein (163aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
Peptide deformylase 2 n=18 Tax=Bifidobacterium RepID=DEF2_BIFLO
polypeptide deformylase
L1_007_122G1_scaffold_822_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(976..3063)
DNA (2088bp) protein (696aa)
Long-chain acyl-CoA synthetases (AMP-forming) {ECO:0000313|EMBL:CBK70451.1}; EC=6.2.1.3 {ECO:0000313|EMBL:CBK70451.1};; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
Long-chain acyl-CoA synthetases (AMP-forming) (EC:6.2.1.3)
Long-chain-fatty acid CoA ligase n=5 Tax=Bifidobacterium RepID=F8AQ43_BIFLN
L1_007_122G1_scaffold_822_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3154..3645)
DNA (492bp) protein (164aa)
Uncharacterized protein n=12 Tax=Bifidobacterium RepID=B3DRS7_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD97846.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_007_122G1_scaffold_822_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(3807..4931)
DNA (1125bp) protein (375aa)
IMP dehydrogenase family protein n=17 Tax=Bacteria RepID=D6ZUK8_BIFLJ
inositol-5-monophosphate dehydrogenase
IMP dehydrogenase family protein {ECO:0000313|EMBL:EEI80165.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L1_007_122G1_scaffold_822_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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5059..6279
DNA (1221bp) protein (407aa)
icd1; isocitrate dehydrogenase (EC:1.1.1.41)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
Isocitrate dehydrogenase [NADP] n=7 Tax=Bifidobacterium RepID=E8MJ51_BIFL2
L1_007_122G1_scaffold_822_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6528..8159
DNA (1632bp) protein (544aa)
Monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) n=2 Tax=Bifidobacterium longum RepID=D6DD77_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:AIW43841.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
hypothetical protein
L1_007_122G1_scaffold_822_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(8237..8926)
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G492_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAN25292.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L1_007_122G1_scaffold_822_9
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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9944..11860
DNA (1917bp) protein (639aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518};; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
topB; DNA topoisomerase III (EC:5.99.1.2)
DNA topoisomerase n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9Y0V9_BIFBU
L1_007_122G1_scaffold_822_10
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12119..13168
DNA (1050bp) protein (350aa)
Cytosine methyl transferase, RM methylase bbrUIIM n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=C1J0P5_BIFBU
Cytosine methyl transferase, RM methylase bbrUIIM
Cytosine methyl transferase, RM methylase bbrUIIM {ECO:0000313|EMBL:ABE95799.1}; Methylcytosine methyltransferase M.BbrII {ECO:0000313|EMBL:ACO06245.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L1_007_122G1_scaffold_822_11
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13174..15261
DNA (2088bp) protein (696aa)
Restriction endonuclease R.BbrII n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=C1J0P6_BIFBU
Restriction endonuclease R.BbrII {ECO:0000313|EMBL:ACO06246.1}; Restriction enzyme {ECO:0000313|EMBL:ABE95798.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
restriction enzyme
L1_007_122G1_scaffold_822_12
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15399..16802
DNA (1404bp) protein (468aa)
Modification methylase (EC:2.1.1.72)
Modification methylase {ECO:0000313|EMBL:ABE95797.1}; EC=2.1.1.72 {ECO:0000313|EMBL:ABE95797.1};; N6-adenosine methyltransferase M.BbrIII {ECO:0000313|EMBL:ACO06247.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
Modification methylase n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=C1J0P7_BIFBU
L1_007_122G1_scaffold_822_13
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16784..17731
DNA (948bp) protein (316aa)
Type II restriction-modification system restriction subunit, PstI isoschizomer (EC:3.1.21.4)
Restriction endonuclease R.BbrIII {ECO:0000313|EMBL:ACO06248.1}; Type II restriction-modification system restriction subunit, PstI isoschizomer {ECO:0000313|EMBL:ABE95796.1}; EC=3.1.21.4 {ECO:0000313|EMBL:ABE95796.1};; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
Restriction endonuclease R.BbrIII n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=C1J0P8_BIFBU
L1_007_122G1_scaffold_822_14
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17750..18976
DNA (1227bp) protein (409aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NXR4_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAR01692.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
L1_007_122G1_scaffold_822_15
unknown

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18951..19220
DNA (270bp) protein (90aa)

This feature has no annotations

L1_007_122G1_scaffold_822_16
Bifidobacterium tsurumiense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(19307..19501)
DNA (195bp) protein (65aa)
DNA integration/recombination/inversion protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NXR5_BIFBP
DNA integration/recombination/inversion protein
Integrase/recombinse {ECO:0000313|EMBL:KFJ07143.1}; TaxID=356829 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium tsurumiense.;"
L1_007_122G1_scaffold_822_17
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20002..20781)
DNA (780bp) protein (260aa)
Transposase n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9Y0V3_BIFBU
Transposase
Transposase {ECO:0000313|EMBL:ABE95794.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L1_007_122G1_scaffold_822_18
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20778..21125)
DNA (348bp) protein (116aa)
Transposase n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9Y0V2_BIFBU
Transposase
Transposase {ECO:0000313|EMBL:ABE95793.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
Displaying 18 items

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