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L1_007_122G1_scaffold_947

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_947_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2..1429
DNA (1428bp) protein (476aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1457183 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis EK3.;"
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5E8N5_BIFLI
L1_007_122G1_scaffold_947_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1448..2356)
DNA (909bp) protein (303aa)
Uncharacterized protein n=14 Tax=Bifidobacterium RepID=Q8G7G4_BIFLO
Co/Zn/Cd cation transport protein
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:EEI81764.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L1_007_122G1_scaffold_947_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


2565..4313
DNA (1749bp) protein (583aa)
Signal recognition particle protein n=3 Tax=Bifidobacterium longum RepID=Q8G7G3_BIFLO
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
ffh; signal recognition particle protein
L1_007_122G1_scaffold_947_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4390..5499
DNA (1110bp) protein (370aa)
Metal-dependent hydrolase n=11 Tax=Bacteria RepID=B3DTM8_BIFLD
hypothetical protein
Metal-dependent hydrolase {ECO:0000313|EMBL:ACD98497.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_007_122G1_scaffold_947_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


5732..6193
DNA (462bp) protein (154aa)
30S ribosomal protein S16 n=15 Tax=Bifidobacterium RepID=RS16_BIFLO
rpsP; rpsp
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L1_007_122G1_scaffold_947_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6214..6447
DNA (234bp) protein (78aa)
UPF0109 protein BLD_1053 n=22 Tax=Bifidobacterium RepID=B3DTN0_BIFLD
Predicted RNA-binding protein (contains KH domain)
UPF0109 protein BL0306 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L1_007_122G1_scaffold_947_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6470..7003
DNA (534bp) protein (178aa)
Ribosome maturation factor RimM n=1 Tax=Bifidobacterium breve (strain ACS-071-V-Sch8b) RepID=F6C7E2_BIFBA
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
16S rRNA processing protein RimM
L1_007_122G1_scaffold_947_8
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7197..7490
DNA (294bp) protein (98aa)
Xre-type transcriptional regulator n=2 Tax=Bifidobacterium RepID=B3DTN2_BIFLD
Xre family transcriptional regulator
Helix-turn-helix protein {ECO:0000313|EMBL:EFV37964.1}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
L1_007_122G1_scaffold_947_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7498..8715
DNA (1218bp) protein (406aa)
Uncharacterized protein n=5 Tax=Bifidobacterium RepID=B3DTN3_BIFLD
hypothetical protein
HipA domain protein {ECO:0000313|EMBL:ACJ51500.1}; TaxID=391904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088; / JCM 1222 / NCTC 11817 / S12).;"
L1_007_122G1_scaffold_947_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9083..11221)
DNA (2139bp) protein (713aa)
Uncharacterized protein n=2 Tax=root RepID=B3DTN4_BIFLD
Uncharacterized protein {ECO:0000313|EMBL:CEE98724.1}; TaxID=1682 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis.;"
hypothetical protein
L1_007_122G1_scaffold_947_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11229..12062)
DNA (834bp) protein (278aa)
MalG-type ABC sugar transport system permease component n=5 Tax=Bifidobacterium RepID=B3DTN5_BIFLD
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBK71020.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L1_007_122G1_scaffold_947_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12059..12991)
DNA (933bp) protein (311aa)
MalF-type ABC sugar transport systems permease component n=3 Tax=Bifidobacterium RepID=B3DTN6_BIFLD
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
MalF-type ABC sugar transport systems permease component {ECO:0000313|EMBL:ACD98505.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_007_122G1_scaffold_947_13
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13106..14371)
DNA (1266bp) protein (422aa)
ABC transporter, solute-binding protein n=2 Tax=Bifidobacterium RepID=F6C7D7_BIFBA
ABC transporter substrate-binding protein
ABC transporter, solute-binding protein {ECO:0000313|EMBL:AEF26778.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L1_007_122G1_scaffold_947_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14522..15508)
DNA (987bp) protein (329aa)
Transcriptional regulators n=2 Tax=Bifidobacterium RepID=D6DA21_BIFLN
Transcriptional regulators
Transcriptional regulators {ECO:0000313|EMBL:CBK71024.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L1_007_122G1_scaffold_947_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15760..16224)
DNA (465bp) protein (155aa)
Inosine-uridine nucleoside hydrolase n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GMY8_BIFLS
inosine/uridine-preferring nucleoside hydrolase
Inosine/uridine-preferring nucleoside hydrolase {ECO:0000313|EMBL:ACJ51494.1}; TaxID=391904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088; / JCM 1222 / NCTC 11817 / S12).;"
L1_007_122G1_scaffold_947_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16343..16762)
DNA (420bp) protein (140aa)
Inosine-uridine nucleoside hydrolase n=2 Tax=Bifidobacterium longum RepID=E8MGS1_BIFL2
urhA2; urha2
Inosine-uridine nucleoside hydrolase {ECO:0000313|EMBL:BAJ65974.1}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
L1_007_122G1_scaffold_947_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16860..17723)
DNA (864bp) protein (288aa)
Tas4 n=13 Tax=Bifidobacterium RepID=E4R0B8_BIFLM
oxidoreductase
Aldo/keto reductase {ECO:0000313|EMBL:KEY23454.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L1_007_122G1_scaffold_947_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17789..19762)
DNA (1974bp) protein (658aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5E8P4_BIFLI
Uncharacterized protein {ECO:0000313|EMBL:EEQ54366.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
hypothetical protein
Displaying 18 items

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